Package: MoonlightR

Version: 1.9.0

Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:MoonlightR.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings MoonlightR_1.9.0.tar.gz

StartedAt: 2019-04-07 02:30:49 -0400 (Sun, 07 Apr 2019)

EndedAt: 2019-04-07 02:39:39 -0400 (Sun, 07 Apr 2019)

EllapsedTime: 529.9 seconds

RetCode: 0

Status:  OK

CheckDir: MoonlightR.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:MoonlightR.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings MoonlightR_1.9.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.9-bioc/meat/MoonlightR.Rcheck’
* using R Under development (unstable) (2019-03-18 r76245)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘MoonlightR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘MoonlightR’ version ‘1.9.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘MoonlightR’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
            user system elapsed
URA       24.386  0.899  31.662
DPA        8.546  0.086  11.011
FEA        7.873  0.125  12.850
moonlight  5.823  0.036   7.626
GRN        4.999  0.017   1.125
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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### Running command:
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###   /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL MoonlightR
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* installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’
* installing *source* package ‘MoonlightR’ ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (MoonlightR)

name	user	system	elapsed
DPA	8.546	0.086	11.011
FEA	7.873	0.125	12.850
GRN	4.999	0.017	1.125
GSEA	0	0	0
LPA	0.353	0.018	1.501
PRA	0.003	0.000	0.003
URA	24.386	0.899	31.662
getDataGEO	0	0	0
getDataTCGA	0.000	0.000	0.001
moonlight	5.823	0.036	7.626
plotCircos	0.893	0.114	1.503
plotFEA	1.591	0.086	3.216
plotNetworkHive	0.117	0.012	0.191
plotURA	0.110	0.000	0.246