Package: MiPP

Version: 1.55.0

Command: C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:MiPP.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings MiPP_1.55.0.tar.gz

StartedAt: 2019-04-09 04:16:14 -0400 (Tue, 09 Apr 2019)

EndedAt: 2019-04-09 04:18:54 -0400 (Tue, 09 Apr 2019)

EllapsedTime: 160.2 seconds

RetCode: 0

Status:  OK

CheckDir: MiPP.Rcheck

Warnings: 0

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### Running command:
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###   C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:MiPP.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings MiPP_1.55.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.9-bioc/meat/MiPP.Rcheck'
* using R Under development (unstable) (2019-03-09 r76216)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'MiPP/DESCRIPTION' ... OK
* this is package 'MiPP' version '1.55.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'MiPP' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
NB: .First.lib is obsolete and will not be used in R >= 3.0.0
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
          user system elapsed
mipp     31.76   0.02   31.81
mipp.seq 21.92   0.00   21.93
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
          user system elapsed
mipp     35.57   0.00   35.59
mipp.seq 21.52   0.03   21.54
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'C:/Users/biocbuild/bbs-3.9-bioc/meat/MiPP.Rcheck/00check.log'
for details.

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/MiPP_1.55.0.tar.gz && rm -rf MiPP.buildbin-libdir && mkdir MiPP.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MiPP.buildbin-libdir MiPP_1.55.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL MiPP_1.55.0.zip && rm MiPP_1.55.0.tar.gz MiPP_1.55.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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100  167k  100  167k    0     0  2496k      0 --:--:-- --:--:-- --:--:-- 2790k

install for i386

* installing *source* package 'MiPP' ...
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'MiPP'
    finding HTML links ... done
    colon                                   html  
    cv.mipp.rule                            html  
    get.mipp                                html  
    get.mipp.lda                            html  
    get.mipp.logistic                       html  
    get.mipp.qda                            html  
    get.mipp.svm.linear                     html  
    get.mipp.svm.rbf                        html  
    leuk1                                   html  
    leuk2                                   html  
    leukemia                                html  
    linearkernel.decision.function          html  
    mipp                                    html  
    mipp.preproc                            html  
    mipp.rule                               html  
    mipp.seq                                html  
    pre.select                              html  
    quant.normal                            html  
    quant.normal2                           html  
    rbfkernel.decision.function             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'MiPP' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MiPP' as MiPP_1.55.0.zip
* DONE (MiPP)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'MiPP' successfully unpacked and MD5 sums checked