Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-04-09 11:46:08 -0400 (Tue, 09 Apr 2019).
Package 793/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
ImmuneSpaceR 1.11.5 ImmuneSpace Package Maintainer
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | [ OK ] | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: ImmuneSpaceR |
Version: 1.11.5 |
Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:ImmuneSpaceR.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings ImmuneSpaceR_1.11.5.tar.gz |
StartedAt: 2019-04-09 01:21:23 -0400 (Tue, 09 Apr 2019) |
EndedAt: 2019-04-09 01:23:08 -0400 (Tue, 09 Apr 2019) |
EllapsedTime: 104.9 seconds |
RetCode: 0 |
Status: OK |
CheckDir: ImmuneSpaceR.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:ImmuneSpaceR.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings ImmuneSpaceR_1.11.5.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.9-bioc/meat/ImmuneSpaceR.Rcheck’ * using R Under development (unstable) (2019-03-18 r76245) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘ImmuneSpaceR/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘ImmuneSpaceR’ version ‘1.11.5’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘ImmuneSpaceR’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Unexported objects imported by ':::' calls: ‘Rlabkey:::.lkdefaults’ ‘Rlabkey:::labkey.getRequestOptions’ See the note in ?`:::` about the use of this operator. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE .getDataToPlot: no visible binding for global variable ‘value_reported’ Undefined global functions or variables: value_reported * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/home/biocbuild/bbs-3.9-bioc/meat/ImmuneSpaceR.Rcheck/00check.log’ for details.
ImmuneSpaceR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL ImmuneSpaceR ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’ * installing *source* package ‘ImmuneSpaceR’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ImmuneSpaceR)
ImmuneSpaceR.Rcheck/tests/testthat.Rout
R Under development (unstable) (2019-03-18 r76245) -- "Unsuffered Consequences" Copyright (C) 2019 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(ImmuneSpaceR) A .netrc file is required to connect to ImmuneSpace. For more information on how to create one, refer to the Configuration section of the introduction vignette. > > if (Sys.info()["user"] != "biocbuild") test_check("ImmuneSpaceR") > > proc.time() user system elapsed 3.477 0.142 3.605
ImmuneSpaceR.Rcheck/ImmuneSpaceR-Ex.timings
name | user | system | elapsed | |
CreateConnection | 0.138 | 0.020 | 0.378 | |
ISpalette | 0.005 | 0.000 | 0.005 | |
ImmuneSpaceConnection | 0.019 | 0.000 | 0.129 | |
check_netrc | 0.001 | 0.000 | 0.001 | |
interactive_netrc | 0 | 0 | 0 | |
loadConnection | 0.088 | 0.000 | 0.106 | |
template_IS | 0.014 | 0.050 | 0.236 | |
theme_IS | 0.612 | 0.076 | 0.688 | |
write_netrc | 0.001 | 0.000 | 0.001 | |