| Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-04-09 11:57:29 -0400 (Tue, 09 Apr 2019).
| Package 647/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| GenomicFeatures 1.35.9 Bioconductor Package Maintainer
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | ERROR | |||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | ERROR | OK | |||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | ERROR | OK | |||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | ERROR | OK |
| Package: GenomicFeatures |
| Version: 1.35.9 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/GenomicFeatures_1.35.9.tar.gz && rm -rf GenomicFeatures.buildbin-libdir && mkdir GenomicFeatures.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GenomicFeatures.buildbin-libdir GenomicFeatures_1.35.9.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL GenomicFeatures_1.35.9.zip && rm GenomicFeatures_1.35.9.tar.gz GenomicFeatures_1.35.9.zip |
| StartedAt: 2019-04-08 20:01:54 -0400 (Mon, 08 Apr 2019) |
| EndedAt: 2019-04-08 20:03:35 -0400 (Mon, 08 Apr 2019) |
| EllapsedTime: 100.5 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/GenomicFeatures_1.35.9.tar.gz && rm -rf GenomicFeatures.buildbin-libdir && mkdir GenomicFeatures.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GenomicFeatures.buildbin-libdir GenomicFeatures_1.35.9.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL GenomicFeatures_1.35.9.zip && rm GenomicFeatures_1.35.9.tar.gz GenomicFeatures_1.35.9.zip
###
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install for i386
* installing *source* package 'GenomicFeatures' ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'GenomicFeatures'
finding HTML links ... done
DEFAULT_CIRC_SEQS html
FeatureDb-class html
finding level-2 HTML links ... done
TxDb-class html
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as-format-methods html
coordinate-mapping-methods html
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coverageByTranscript html
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disjointExons html
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exonicParts html
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extractTranscriptSeqs html
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extractUpstreamSeqs html
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features html
getPromoterSeq-methods html
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id2name html
makeFeatureDbFromUCSC html
makeTxDb html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpUf73eW/R.INSTALL1a187a282f5f/GenomicFeatures/man/makeTxDb.Rd:201: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpUf73eW/R.INSTALL1a187a282f5f/GenomicFeatures/man/makeTxDb.Rd:206: file link 'saveDb' in package 'AnnotationDbi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpUf73eW/R.INSTALL1a187a282f5f/GenomicFeatures/man/makeTxDb.Rd:207: file link 'loadDb' in package 'AnnotationDbi' does not exist and so has been treated as a topic
makeTxDbFromBiomart html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpUf73eW/R.INSTALL1a187a282f5f/GenomicFeatures/man/makeTxDbFromBiomart.Rd:141: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
makeTxDbFromEnsembl html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpUf73eW/R.INSTALL1a187a282f5f/GenomicFeatures/man/makeTxDbFromEnsembl.Rd:72: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
makeTxDbFromGFF html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpUf73eW/R.INSTALL1a187a282f5f/GenomicFeatures/man/makeTxDbFromGFF.Rd:29: file link 'GFF3File' in package 'rtracklayer' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpUf73eW/R.INSTALL1a187a282f5f/GenomicFeatures/man/makeTxDbFromGFF.Rd:30: file link 'GTFFile' in package 'rtracklayer' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpUf73eW/R.INSTALL1a187a282f5f/GenomicFeatures/man/makeTxDbFromGFF.Rd:99: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpUf73eW/R.INSTALL1a187a282f5f/GenomicFeatures/man/makeTxDbFromGFF.Rd:101: file link 'import' in package 'rtracklayer' does not exist and so has been treated as a topic
makeTxDbFromGRanges html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpUf73eW/R.INSTALL1a187a282f5f/GenomicFeatures/man/makeTxDbFromGRanges.Rd:10: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpUf73eW/R.INSTALL1a187a282f5f/GenomicFeatures/man/makeTxDbFromGRanges.Rd:20: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpUf73eW/R.INSTALL1a187a282f5f/GenomicFeatures/man/makeTxDbFromGRanges.Rd:21: file link 'import' in package 'rtracklayer' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpUf73eW/R.INSTALL1a187a282f5f/GenomicFeatures/man/makeTxDbFromGRanges.Rd:57: file link 'import' in package 'rtracklayer' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpUf73eW/R.INSTALL1a187a282f5f/GenomicFeatures/man/makeTxDbFromGRanges.Rd:63: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
makeTxDbFromUCSC html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpUf73eW/R.INSTALL1a187a282f5f/GenomicFeatures/man/makeTxDbFromUCSC.Rd:99: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
makeTxDbPackage html
mapIdsToRanges html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpUf73eW/R.INSTALL1a187a282f5f/GenomicFeatures/man/mapIdsToRanges.Rd:24: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
mapRangesToIds html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpUf73eW/R.INSTALL1a187a282f5f/GenomicFeatures/man/mapRangesToIds.Rd:25: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic
microRNAs html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpUf73eW/R.INSTALL1a187a282f5f/GenomicFeatures/man/microRNAs.Rd:32: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
nearest-methods html
select-methods html
transcriptLengths html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpUf73eW/R.INSTALL1a187a282f5f/GenomicFeatures/man/transcriptLengths.Rd:44: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpUf73eW/R.INSTALL1a187a282f5f/GenomicFeatures/man/transcriptLengths.Rd:107: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
transcriptLocs2refLocs html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpUf73eW/R.INSTALL1a187a282f5f/GenomicFeatures/man/transcriptLocs2refLocs.Rd:36: file link 'IntegerList' in package 'IRanges' does not exist and so has been treated as a topic
transcripts html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpUf73eW/R.INSTALL1a187a282f5f/GenomicFeatures/man/transcripts.Rd:85: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpUf73eW/R.INSTALL1a187a282f5f/GenomicFeatures/man/transcripts.Rd:86: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpUf73eW/R.INSTALL1a187a282f5f/GenomicFeatures/man/transcripts.Rd:89: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpUf73eW/R.INSTALL1a187a282f5f/GenomicFeatures/man/transcripts.Rd:122: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpUf73eW/R.INSTALL1a187a282f5f/GenomicFeatures/man/transcripts.Rd:124: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
transcriptsBy html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpUf73eW/R.INSTALL1a187a282f5f/GenomicFeatures/man/transcriptsBy.Rd:49: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpUf73eW/R.INSTALL1a187a282f5f/GenomicFeatures/man/transcriptsBy.Rd:52: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpUf73eW/R.INSTALL1a187a282f5f/GenomicFeatures/man/transcriptsBy.Rd:54: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpUf73eW/R.INSTALL1a187a282f5f/GenomicFeatures/man/transcriptsBy.Rd:79: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpUf73eW/R.INSTALL1a187a282f5f/GenomicFeatures/man/transcriptsBy.Rd:89: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
transcriptsByOverlaps html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpUf73eW/R.INSTALL1a187a282f5f/GenomicFeatures/man/transcriptsByOverlaps.Rd:46: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpUf73eW/R.INSTALL1a187a282f5f/GenomicFeatures/man/transcriptsByOverlaps.Rd:49: file link 'findOverlaps' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpUf73eW/R.INSTALL1a187a282f5f/GenomicFeatures/man/transcriptsByOverlaps.Rd:59: file link 'findOverlaps' in package 'IRanges' does not exist and so has been treated as a topic
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'GenomicFeatures' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GenomicFeatures' as GenomicFeatures_1.35.9.zip
* DONE (GenomicFeatures)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'GenomicFeatures' successfully unpacked and MD5 sums checked