Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-04-09 12:21:13 -0400 (Tue, 09 Apr 2019).
Package 682/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
GOexpress 1.17.1 Kevin Rue-Albrecht
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: GOexpress |
Version: 1.17.1 |
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/GOexpress_1.17.1.tar.gz && rm -rf GOexpress.buildbin-libdir && mkdir GOexpress.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GOexpress.buildbin-libdir GOexpress_1.17.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL GOexpress_1.17.1.zip && rm GOexpress_1.17.1.tar.gz GOexpress_1.17.1.zip |
StartedAt: 2019-04-08 19:30:27 -0400 (Mon, 08 Apr 2019) |
EndedAt: 2019-04-08 19:31:39 -0400 (Mon, 08 Apr 2019) |
EllapsedTime: 71.9 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/GOexpress_1.17.1.tar.gz && rm -rf GOexpress.buildbin-libdir && mkdir GOexpress.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GOexpress.buildbin-libdir GOexpress_1.17.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL GOexpress_1.17.1.zip && rm GOexpress_1.17.1.tar.gz GOexpress_1.17.1.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 1951k 100 1951k 0 0 24.6M 0 --:--:-- --:--:-- --:--:-- 26.8M install for i386 * installing *source* package 'GOexpress' ... ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'GOexpress' finding HTML links ... done AlvMac html AlvMac_GOgenes html AlvMac_allGO html AlvMac_allgenes html AlvMac_results html AlvMac_results.pVal html GO_analyse html GOexpress-package html Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpAlow9s/R.INSTALL1d9ce837b1f/GOexpress/man/GOexpress-package.Rd:100: file link 'Biobase' in package 'Biobase' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpAlow9s/R.INSTALL1d9ce837b1f/GOexpress/man/GOexpress-package.Rd:102: file link 'RColorBrewer' in package 'RColorBrewer' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpAlow9s/R.INSTALL1d9ce837b1f/GOexpress/man/GOexpress-package.Rd:103: file link 'VennDiagram' in package 'VennDiagram' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpAlow9s/R.INSTALL1d9ce837b1f/GOexpress/man/GOexpress-package.Rd:109: file link 'bluered' in package 'gplots' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpAlow9s/R.INSTALL1d9ce837b1f/GOexpress/man/GOexpress-package.Rd:110: file link 'greenred' in package 'gplots' does not exist and so has been treated as a topic cluster_GO html expression_plot html Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpAlow9s/R.INSTALL1d9ce837b1f/GOexpress/man/expression_plot.Rd:140: file link 'Biobase' in package 'Biobase' does not exist and so has been treated as a topic expression_plot_symbol html Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpAlow9s/R.INSTALL1d9ce837b1f/GOexpress/man/expression_plot_symbol.Rd:152: file link 'Biobase' in package 'Biobase' does not exist and so has been treated as a topic expression_profiles html Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpAlow9s/R.INSTALL1d9ce837b1f/GOexpress/man/expression_profiles.Rd:154: file link 'Biobase' in package 'Biobase' does not exist and so has been treated as a topic expression_profiles_symbol html Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpAlow9s/R.INSTALL1d9ce837b1f/GOexpress/man/expression_profiles_symbol.Rd:161: file link 'Biobase' in package 'Biobase' does not exist and so has been treated as a topic heatmap_GO html Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpAlow9s/R.INSTALL1d9ce837b1f/GOexpress/man/heatmap_GO.Rd:139: file link 'brewer.pal.info' in package 'RColorBrewer' does not exist and so has been treated as a topic hist_scores html list_genes html microarray2dataset html pValue_GO html plot_design html prefix2dataset html quantiles_scores html rerank html subEset html Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpAlow9s/R.INSTALL1d9ce837b1f/GOexpress/man/subEset.Rd:46: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic subset_scores html table_genes html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'GOexpress' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'GOexpress' as GOexpress_1.17.1.zip * DONE (GOexpress) * installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library' package 'GOexpress' successfully unpacked and MD5 sums checked