Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-04-09 11:51:05 -0400 (Tue, 09 Apr 2019).
Package 670/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
GIGSEA 1.1.0 Shijia Zhu
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | [ OK ] | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: GIGSEA |
Version: 1.1.0 |
Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:GIGSEA.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings GIGSEA_1.1.0.tar.gz |
StartedAt: 2019-04-09 00:53:09 -0400 (Tue, 09 Apr 2019) |
EndedAt: 2019-04-09 00:54:34 -0400 (Tue, 09 Apr 2019) |
EllapsedTime: 84.6 seconds |
RetCode: 0 |
Status: OK |
CheckDir: GIGSEA.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:GIGSEA.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings GIGSEA_1.1.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.9-bioc/meat/GIGSEA.Rcheck’ * using R Under development (unstable) (2019-03-18 r76245) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘GIGSEA/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘GIGSEA’ version ‘1.1.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘GIGSEA’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU or elapsed time > 5s user system elapsed geneSet2Net 12.425 0.357 13.082 geneSet2sparseMatrix 10.523 0.227 11.099 permutationMultipleLmMatrix 4.989 0.056 5.064 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
GIGSEA.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL GIGSEA ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’ * installing *source* package ‘GIGSEA’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GIGSEA)
GIGSEA.Rcheck/GIGSEA-Ex.timings
name | user | system | elapsed | |
geneSet2Net | 12.425 | 0.357 | 13.082 | |
geneSet2sparseMatrix | 10.523 | 0.227 | 11.099 | |
gmt2geneSet | 2.943 | 0.004 | 3.372 | |
matrixPval | 0.012 | 0.000 | 0.013 | |
orderedIntersect | 0.051 | 0.000 | 0.051 | |
permutationMultipleLm | 0.027 | 0.012 | 0.038 | |
permutationMultipleLmMatrix | 4.989 | 0.056 | 5.064 | |
permutationSimpleLm | 0.024 | 0.000 | 0.024 | |
permutationSimpleLmMatrix | 1.571 | 0.020 | 1.591 | |
runGIGSEA | 0 | 0 | 0 | |
weightedGSEA | 0.020 | 0.000 | 0.021 | |
weightedMultipleLm | 3.719 | 0.044 | 3.762 | |
weightedPearsonCorr | 0.057 | 0.000 | 0.057 | |