Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-04-09 12:41:58 -0400 (Tue, 09 Apr 2019).
Package 509/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
ERSSA 1.1.1 Zixuan Shao
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: ERSSA |
Version: 1.1.1 |
Command: C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ERSSA.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings ERSSA_1.1.1.tar.gz |
StartedAt: 2019-04-09 02:36:15 -0400 (Tue, 09 Apr 2019) |
EndedAt: 2019-04-09 02:43:04 -0400 (Tue, 09 Apr 2019) |
EllapsedTime: 409.6 seconds |
RetCode: 0 |
Status: OK |
CheckDir: ERSSA.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ERSSA.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings ERSSA_1.1.1.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.9-bioc/meat/ERSSA.Rcheck' * using R Under development (unstable) (2019-03-09 r76216) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'ERSSA/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'ERSSA' version '1.1.1' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'ERSSA' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU or elapsed time > 5s user system elapsed erssa_deseq2 32.46 0.25 32.72 erssa_deseq2_parallel 27.57 0.10 27.66 erssa 17.71 0.75 18.50 ** running examples for arch 'x64' ... OK Examples with CPU or elapsed time > 5s user system elapsed erssa_deseq2_parallel 32.16 0.13 32.30 erssa_deseq2 28.83 0.03 28.86 erssa 16.19 0.37 16.61 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
ERSSA.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/ERSSA_1.1.1.tar.gz && rm -rf ERSSA.buildbin-libdir && mkdir ERSSA.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ERSSA.buildbin-libdir ERSSA_1.1.1.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL ERSSA_1.1.1.zip && rm ERSSA_1.1.1.tar.gz ERSSA_1.1.1.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 2840k 100 2840k 0 0 22.6M 0 --:--:-- --:--:-- --:--:-- 24.1M install for i386 * installing *source* package 'ERSSA' ... ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'ERSSA' finding HTML links ... done comb_gen html combinations.partial html condition_table.full html condition_table.partial html count_filter html count_table.filtered.partial html count_table.full html count_table.partial html deg.partial html erssa html erssa_deseq2 html erssa_deseq2_parallel html erssa_edger html erssa_edger_parallel html ggplot2_TPR_FPRPlot html ggplot2_dotplot html ggplot2_intersectPlot html ggplot2_marginPlot html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'ERSSA' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'ERSSA' as ERSSA_1.1.1.zip * DONE (ERSSA) * installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library' package 'ERSSA' successfully unpacked and MD5 sums checked
ERSSA.Rcheck/examples_i386/ERSSA-Ex.timings
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ERSSA.Rcheck/examples_x64/ERSSA-Ex.timings
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