Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-04-09 11:53:02 -0400 (Tue, 09 Apr 2019).
Package 408/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
DeMixT 0.99.9 Zeya Wang
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | [ OK ] | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: DeMixT |
Version: 0.99.9 |
Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL DeMixT |
StartedAt: 2019-04-08 18:22:51 -0400 (Mon, 08 Apr 2019) |
EndedAt: 2019-04-08 18:23:25 -0400 (Mon, 08 Apr 2019) |
EllapsedTime: 34.0 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL DeMixT ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’ * installing *source* package ‘DeMixT’ ... ** using staged installation ** libs gcc -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -c DeMixT.c -o DeMixT.o DeMixT.c: In function ‘Tdemix’: DeMixT.c:253:26: warning: implicit declaration of function ‘Rprintf’; did you mean ‘dprintf’? [-Wimplicit-function-declaration] if (nHavepi != 1) Rprintf("Iteration %d: updating purities\n", i+1); ^˜˜˜˜˜˜ dprintf DeMixT.c:43:9: warning: unused variable ‘nthread’ [-Wunused-variable] int nthread=*thread; ^˜˜˜˜˜˜ DeMixT.c:36:45: warning: variable ‘st2_sig_2’ set but not used [-Wunused-but-set-variable] double *st1_mu_2, *st2_mu_2, *st1_sig_2, *st2_sig_2; ^˜˜˜˜˜˜˜˜ DeMixT.c:36:33: warning: variable ‘st1_sig_2’ set but not used [-Wunused-but-set-variable] double *st1_mu_2, *st2_mu_2, *st1_sig_2, *st2_sig_2; ^˜˜˜˜˜˜˜˜ DeMixT.c:36:22: warning: variable ‘st2_mu_2’ set but not used [-Wunused-but-set-variable] double *st1_mu_2, *st2_mu_2, *st1_sig_2, *st2_sig_2; ^˜˜˜˜˜˜˜ DeMixT.c:36:11: warning: variable ‘st1_mu_2’ set but not used [-Wunused-but-set-variable] double *st1_mu_2, *st2_mu_2, *st1_sig_2, *st2_sig_2; ^˜˜˜˜˜˜˜ DeMixT.c: In function ‘gettumor’: DeMixT.c:540:21: warning: variable ‘obj_new’ set but not used [-Wunused-but-set-variable] double obj_old, obj_new; ^˜˜˜˜˜˜ DeMixT.c:540:12: warning: variable ‘obj_old’ set but not used [-Wunused-but-set-variable] double obj_old, obj_new; ^˜˜˜˜˜˜ DeMixT.c: In function ‘getpi’: DeMixT.c:1229:21: warning: variable ‘obj_new’ set but not used [-Wunused-but-set-variable] double obj_old, obj_new; ^˜˜˜˜˜˜ DeMixT.c:1229:12: warning: variable ‘obj_old’ set but not used [-Wunused-but-set-variable] double obj_old, obj_new; ^˜˜˜˜˜˜ DeMixT.c: In function ‘getpiT’: DeMixT.c:1259:21: warning: variable ‘obj_new’ set but not used [-Wunused-but-set-variable] double obj_old, obj_new; ^˜˜˜˜˜˜ DeMixT.c:1259:12: warning: variable ‘obj_old’ set but not used [-Wunused-but-set-variable] double obj_old, obj_new; ^˜˜˜˜˜˜ DeMixT.c: In function ‘Tdemix’: DeMixT.c:188:11: warning: ‘Tavgtmp’ may be used uninitialized in this function [-Wmaybe-uninitialized] if(Tavgtmp <= 0) Tavgtmp = exp(10*log(2.0) + p->Tsigma[j]/2.0*pow(log(2.0), 2.0)); ^ DeMixT.c:226:8: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] CD = calloc(intx ,sizeof(double *)); ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ In file included from DeMixT.c:8:0: /usr/include/stdlib.h:541:14: note: in a call to allocation function ‘calloc’ declared here extern void *calloc (size_t __nmemb, size_t __size) ^˜˜˜˜˜ gcc -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -c init.c -o init.o gcc -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -c registerDynamicSymbol.c -o registerDynamicSymbol.o gcc -shared -L/home/biocbuild/bbs-3.9-bioc/R/lib -L/usr/local/lib -o DeMixT.so DeMixT.o init.o registerDynamicSymbol.o -fopenmp -L/home/biocbuild/bbs-3.9-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.9-bioc/R/library/00LOCK-DeMixT/00new/DeMixT/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DeMixT)