Back to Multiple platform build/check report for BioC 3.9
ABC[D]EFGHIJKLMNOPQRSTUVWXYZ

INSTALL report for DeMixT on celaya2

This page was generated on 2019-04-09 13:22:05 -0400 (Tue, 09 Apr 2019).

Package 408/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DeMixT 0.99.9
Zeya Wang , Fan Gao
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/DeMixT
Branch: master
Last Commit: cf860b0
Last Changed Date: 2019-04-02 15:33:18 -0400 (Tue, 02 Apr 2019)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK 

Summary

Package: DeMixT
Version: 0.99.9
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL DeMixT
StartedAt: 2019-04-08 18:42:33 -0400 (Mon, 08 Apr 2019)
EndedAt: 2019-04-08 18:43:15 -0400 (Mon, 08 Apr 2019)
EllapsedTime: 42.6 seconds
RetCode: 0
Status:  OK 

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL DeMixT
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’
* installing *source* package ‘DeMixT’ ...
** using staged installation
** libs
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include -fopenmp -fPIC  -Wall -g -O2  -c DeMixT.c -o DeMixT.o
DeMixT.c:253:26: warning: implicit declaration of function 'Rprintf' is invalid in C99 [-Wimplicit-function-declaration]
      if (nHavepi != 1)  Rprintf("Iteration %d: updating purities\n", i+1);
                         ^
DeMixT.c:43:9: warning: unused variable 'nthread' [-Wunused-variable]
    int nthread=*thread;
        ^
2 warnings generated.
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include -fopenmp -fPIC  -Wall -g -O2  -c init.c -o init.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include -fopenmp -fPIC  -Wall -g -O2  -c registerDynamicSymbol.c -o registerDynamicSymbol.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o DeMixT.so DeMixT.o init.o registerDynamicSymbol.o -fopenmp -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/3.6/Resources/library/00LOCK-DeMixT/00new/DeMixT/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (DeMixT)