Package: DChIPRep

Version: 1.13.0

Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/DChIPRep_1.13.0.tar.gz && rm -rf DChIPRep.buildbin-libdir && mkdir DChIPRep.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DChIPRep.buildbin-libdir DChIPRep_1.13.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL DChIPRep_1.13.0.zip && rm DChIPRep_1.13.0.tar.gz DChIPRep_1.13.0.zip

StartedAt: 2019-04-08 20:25:21 -0400 (Mon, 08 Apr 2019)

EndedAt: 2019-04-08 20:27:09 -0400 (Mon, 08 Apr 2019)

EllapsedTime: 107.7 seconds

RetCode: 0

Status:  OK

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### Running command:
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###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/DChIPRep_1.13.0.tar.gz && rm -rf DChIPRep.buildbin-libdir && mkdir DChIPRep.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DChIPRep.buildbin-libdir DChIPRep_1.13.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL DChIPRep_1.13.0.zip && rm DChIPRep_1.13.0.tar.gz DChIPRep_1.13.0.zip
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install for i386

* installing *source* package 'DChIPRep' ...
** R
** data
*** moving datasets to lazyload DB

Registered S3 methods overwritten by 'ggplot2':
  method         from 
  [.quosures     rlang
  c.quosures     rlang
  print.quosures rlang
Warning: replacing previous import 'ggplot2::Position' by 'BiocGenerics::Position' when loading 'soGGi'
** exec
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'ggplot2::Position' by 'BiocGenerics::Position' when loading 'soGGi'
** help
*** installing help indices
  converting help for package 'DChIPRep'
    finding HTML links ... done
    DChIPRep                                html  
    DChIPRepResults                         html  
    DESeq2Data                              html  
    FDRresults                              html  
    TSS_galonska                            html  
    chip_galonska                           html  
    exampleChipData                         html  
    exampleInputData                        html  
    exampleSampleTable                      html  
    getMATfromDataFrame                     html  
    importData                              html  
    importDataFromMatrices                  html  
    importData_soGGi                        html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpAHd8MQ/R.INSTALL1c24cee7621/DChIPRep/man/importData_soGGi.Rd:36: file link 'regionPlot' in package 'soGGi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpAHd8MQ/R.INSTALL1c24cee7621/DChIPRep/man/importData_soGGi.Rd:14: file link 'GenomicRanges-class' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpAHd8MQ/R.INSTALL1c24cee7621/DChIPRep/man/importData_soGGi.Rd:27: file link 'regionPlot' in package 'soGGi' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpAHd8MQ/R.INSTALL1c24cee7621/DChIPRep/man/importData_soGGi.Rd:65: file link 'regionPlot' in package 'soGGi' does not exist and so has been treated as a topic
    input_galonska                          html  
    plotProfiles                            html  
    plotSignificance                        html  
    resultsDChIPRep                         html  
    robust_mean                             html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpAHd8MQ/R.INSTALL1c24cee7621/DChIPRep/man/robust_mean.Rd:17: file link 'smhuber' in package 'smoothmest' does not exist and so has been treated as a topic
    runTesting                              html  
    sample_table_galonska                   html  
    show                                    html  
    summarizeCountsPerPosition              html  
    testData                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'ggplot2::Position' by 'BiocGenerics::Position' when loading 'soGGi'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'ggplot2::Position' by 'BiocGenerics::Position' when loading 'soGGi'
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'DChIPRep' ...
** testing if installed package can be loaded
Warning: replacing previous import 'ggplot2::Position' by 'BiocGenerics::Position' when loading 'soGGi'
* MD5 sums
packaged installation of 'DChIPRep' as DChIPRep_1.13.0.zip
* DONE (DChIPRep)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'DChIPRep' successfully unpacked and MD5 sums checked