Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-04-09 12:57:50 -0400 (Tue, 09 Apr 2019).
Package 266/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
ChromHeatMap 1.37.0 Tim F. Rayner
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ OK ] | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: ChromHeatMap |
Version: 1.37.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:ChromHeatMap.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings ChromHeatMap_1.37.0.tar.gz |
StartedAt: 2019-04-09 00:39:50 -0400 (Tue, 09 Apr 2019) |
EndedAt: 2019-04-09 00:45:03 -0400 (Tue, 09 Apr 2019) |
EllapsedTime: 312.8 seconds |
RetCode: 0 |
Status: OK |
CheckDir: ChromHeatMap.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:ChromHeatMap.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings ChromHeatMap_1.37.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.9-bioc/meat/ChromHeatMap.Rcheck’ * using R Under development (unstable) (2019-03-18 r76245) * using platform: x86_64-apple-darwin15.6.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘ChromHeatMap/DESCRIPTION’ ... OK * this is package ‘ChromHeatMap’ version ‘1.37.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘ChromHeatMap’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE createChrMatrix: no visible global function definition for ‘new’ makeRangedDataList : .makeGRanges: no visible global function definition for ‘as’ plotChrMap: no visible global function definition for ‘new’ makeChrStrandData,matrix: no visible global function definition for ‘new’ Undefined global functions or variables: as new Consider adding importFrom("methods", "as", "new") to your NAMESPACE file (and ensure that your DESCRIPTION Imports field contains 'methods'). * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU or elapsed time > 5s user system elapsed makeRangedDataList 5.262 0.504 5.783 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/Users/biocbuild/bbs-3.9-bioc/meat/ChromHeatMap.Rcheck/00check.log’ for details.
ChromHeatMap.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL ChromHeatMap ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’ * installing *source* package ‘ChromHeatMap’ ... ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ChromHeatMap)
ChromHeatMap.Rcheck/ChromHeatMap-Ex.timings
name | user | system | elapsed | |
ChrMapPlot-class | 0.790 | 0.091 | 0.883 | |
ChrStrandData-class | 0.204 | 0.027 | 0.231 | |
ChrStrandMatrix-class | 0.072 | 0.016 | 0.087 | |
chrHeatMap | 0.089 | 0.011 | 0.101 | |
createChrMatrix | 0.117 | 0.018 | 0.135 | |
drawMapDendro | 0.095 | 0.005 | 0.101 | |
grabChrMapProbes | 0.348 | 0.017 | 0.365 | |
makeChrStrandData | 0.123 | 0.006 | 0.131 | |
makeRangedDataList | 5.262 | 0.504 | 5.783 | |
plotChrMap | 0.282 | 0.053 | 0.336 | |