Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-04-09 11:37:52 -0400 (Tue, 09 Apr 2019).
Package 104/1703 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
Basic4Cseq 1.19.1 Carolin Walter
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | [ OK ] | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: Basic4Cseq |
Version: 1.19.1 |
Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:Basic4Cseq.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings Basic4Cseq_1.19.1.tar.gz |
StartedAt: 2019-04-08 22:52:36 -0400 (Mon, 08 Apr 2019) |
EndedAt: 2019-04-08 22:56:36 -0400 (Mon, 08 Apr 2019) |
EllapsedTime: 239.7 seconds |
RetCode: 0 |
Status: OK |
CheckDir: Basic4Cseq.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:Basic4Cseq.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings Basic4Cseq_1.19.1.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.9-bioc/meat/Basic4Cseq.Rcheck’ * using R Under development (unstable) (2019-03-18 r76245) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘Basic4Cseq/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘Basic4Cseq’ version ‘1.19.1’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘Basic4Cseq’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU or elapsed time > 5s user system elapsed readsToFragments 4.508 1.676 6.188 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
Basic4Cseq.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL Basic4Cseq ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’ * installing *source* package ‘Basic4Cseq’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Basic4Cseq)
Basic4Cseq.Rcheck/Basic4Cseq-Ex.timings
name | user | system | elapsed | |
Data4Cseq-class | 0.002 | 0.000 | 0.001 | |
Data4Cseq | 0.096 | 0.000 | 0.106 | |
checkRestrictionEnzymeSequence | 0.001 | 0.000 | 0.000 | |
chooseNearCisFragments | 0.014 | 0.000 | 0.014 | |
createVirtualFragmentLibrary | 0 | 0 | 0 | |
drawDigestionFragmentHistogram | 0.006 | 0.000 | 0.006 | |
drawHeatmap | 0 | 0 | 0 | |
exportVisualizationFragmentData | 0 | 0 | 0 | |
getReadDistribution | 0.185 | 0.000 | 0.185 | |
giveEnzymeSequence | 0.002 | 0.000 | 0.011 | |
importVisualizationFragmentData | 0.008 | 0.003 | 0.012 | |
liverData | 0.004 | 0.000 | 0.004 | |
liverDataRaw | 0.004 | 0.000 | 0.004 | |
normalizeFragmentData | 0.007 | 0.000 | 0.008 | |
plotTransInteractions | 0.001 | 0.000 | 0.001 | |
prepare4CseqData | 0.000 | 0.000 | 0.001 | |
printBEDFragmentLibrary | 0.000 | 0.000 | 0.001 | |
printWigFile | 0.000 | 0.000 | 0.001 | |
readPointsOfInterestFile | 0.003 | 0.000 | 0.003 | |
readsToFragments | 4.508 | 1.676 | 6.188 | |
simulateDigestion | 0.001 | 0.000 | 0.002 | |
visualizeViewpoint | 0.036 | 0.000 | 0.036 | |