Back to Multiple platform build/check report for BioC 3.9
A[B]CDEFGHIJKLMNOPQRSTUVWXYZ

BUILD report for BSgenome on tokay2

This page was generated on 2019-04-09 11:55:04 -0400 (Tue, 09 Apr 2019).

Package 187/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BSgenome 1.51.0
H. Pagès
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/BSgenome
Branch: master
Last Commit: ab035b9
Last Changed Date: 2018-10-30 11:54:27 -0400 (Tue, 30 Oct 2018)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK [ OK ] WARNINGS  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK 

Summary

Package: BSgenome
Version: 1.51.0
Command: chmod a+r BSgenome -R && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data BSgenome
StartedAt: 2019-04-08 21:04:44 -0400 (Mon, 08 Apr 2019)
EndedAt: 2019-04-08 21:07:19 -0400 (Mon, 08 Apr 2019)
EllapsedTime: 155.3 seconds
RetCode: 0
Status:  OK  
PackageFile: BSgenome_1.51.0.tar.gz
PackageFileSize: 5.787 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r BSgenome -R && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data BSgenome
###
##############################################################################
##############################################################################


* checking for file 'BSgenome/DESCRIPTION' ... OK
* preparing 'BSgenome':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... OK
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
WARNING: directory 'BSgenome/inst/pkgtemplates/BSgenome_datapkg/inst/extdata' is empty
WARNING: directory 'BSgenome/inst/pkgtemplates/MaskedBSgenome_datapkg/inst/extdata' is empty
* building 'BSgenome_1.51.0.tar.gz'
Warning in utils::tar(filepath, pkgname, compression = "gzip", compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  'BSgenome/inst/extdata/GentlemanLab/1000genomes/BSgenome.Hsapiens.1000g.b36female-tools/split_human_b36_female.sh'