BioC experimental data: CHECK report for pRolocdata on perceval

Package: pRolocdata

Version: 1.7.2

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings pRolocdata_1.7.2.tar.gz

StartedAt: 2015-08-22 09:48:36 -0700 (Sat, 22 Aug 2015)

EndedAt: 2015-08-22 09:52:26 -0700 (Sat, 22 Aug 2015)

EllapsedTime: 229.1 seconds

RetCode: 0

Status:  OK

CheckDir: pRolocdata.Rcheck

Warnings: 0

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings pRolocdata_1.7.2.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.2-data-experiment/meat/pRolocdata.Rcheck’
* using R version 3.2.2 Patched (2015-08-14 r69078)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘pRolocdata/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘pRolocdata’ version ‘1.7.2’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘pRolocdata’ can be installed ... [15s/21s] OK
* checking installed package size ... NOTE
  installed size is 21.0Mb
  sub-directories of 1Mb or more:
    data      6.7Mb
    extdata  14.0Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [28s/37s] OK
Examples with CPU or elapsed time > 5s
           user system elapsed
fabre2015 7.803  0.357  12.281
groen2014 6.439  0.110   8.278
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/Users/biocbuild/bbs-3.2-data-experiment/meat/pRolocdata.Rcheck/00check.log’
for details.

* installing *source* package ‘pRolocdata’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (pRolocdata)

name	user	system	elapsed
E14TG2a	0.041	0.003	0.053
andy2011	0.076	0.009	0.118
at_chloro	0.479	0.006	0.649
dunkley2006	0.018	0.004	0.022
fabre2015	7.803	0.357	12.281
foster2006	0.042	0.007	0.070
groen2014	6.439	0.110	8.278
hall2009	0.638	0.024	0.852
havugimana2012	0.903	0.033	1.126
kirkwood2013	0.054	0.005	0.069
kristensen2012	0.032	0.003	0.035
nikolovski2012	1.605	0.048	2.087
nikolovski2014	0.821	0.025	1.023
pRolocdata	0.013	0.011	0.063
pRolocmetadata	0.020	0.024	0.051
tan2009	0.025	0.014	0.062
trotter2010	0.800	0.046	1.041