BioC experimental data: CHECK report for grndata on perceval

Package: grndata

Version: 1.1.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings grndata_1.1.0.tar.gz

StartedAt: 2015-08-22 09:22:04 -0700 (Sat, 22 Aug 2015)

EndedAt: 2015-08-22 09:23:07 -0700 (Sat, 22 Aug 2015)

EllapsedTime: 62.9 seconds

RetCode: 0

Status:  OK

CheckDir: grndata.Rcheck

Warnings: 0

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings grndata_1.1.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.2-data-experiment/meat/grndata.Rcheck’
* using R version 3.2.2 Patched (2015-08-14 r69078)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘grndata/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘grndata’ version ‘1.1.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘grndata’ can be installed ... [16s/19s] OK
* checking installed package size ... NOTE
  installed size is 54.4Mb
  sub-directories of 1Mb or more:
    data  54.2Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [3s/4s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘runTests.R’ [4s/4s]
 [4s/5s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  ‘/Users/biocbuild/bbs-3.2-data-experiment/meat/grndata.Rcheck/00check.log’
for details.

* installing *source* package ‘grndata’ ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (grndata)

name	user	system	elapsed
Availabledata	0.028	0.005	0.034
getData	0.510	0.066	0.625
gnw1565.data	0.433	0.110	0.614
gnw1565.net	0.173	0.047	0.243
gnw2000.data	0.426	0.167	0.678
gnw2000.net	0.254	0.088	0.383
rogers1000.data	0.076	0.017	0.101
rogers1000.net	0.056	0.011	0.074
syntren1000.data	0.088	0.026	0.133
syntren1000.net	0.049	0.008	0.057
syntren300.data	0.025	0.003	0.048
syntren300.net	0.006	0.003	0.010
toy.data	0.002	0.000	0.002
toy.net	0.002	0.000	0.002