BioC experimental data: CHECK report for gageData on perceval

Package: gageData

Version: 2.7.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings gageData_2.7.0.tar.gz

StartedAt: 2015-08-22 09:18:31 -0700 (Sat, 22 Aug 2015)

EndedAt: 2015-08-22 09:19:40 -0700 (Sat, 22 Aug 2015)

EllapsedTime: 69.6 seconds

RetCode: 0

Status:  OK

CheckDir: gageData.Rcheck

Warnings: 0

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings gageData_2.7.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.2-data-experiment/meat/gageData.Rcheck’
* using R version 3.2.2 Patched (2015-08-14 r69078)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘gageData/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘gageData’ version ‘2.7.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘gageData’ can be installed ... [1s/2s] OK
* checking installed package size ... NOTE
  installed size is 10.7Mb
  sub-directories of 1Mb or more:
    data  10.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [39s/47s] OK
Examples with CPU or elapsed time > 5s
             user system elapsed
hnrnp.cnts 21.470  2.084  28.140
genesets    7.056  0.738   9.143
bmp6        5.731  0.287   7.407
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/Users/biocbuild/bbs-3.2-data-experiment/meat/gageData.Rcheck/00check.log’
for details.

* installing *source* package ‘gageData’ ...
** data
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (gageData)

name	user	system	elapsed
bmp6	5.731	0.287	7.407
genesets	7.056	0.738	9.143
gse16873.full	1.042	0.067	1.199
hnrnp.cnts	21.470	2.084	28.140
sc.gene	0.046	0.011	0.084