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BioC experimental data: CHECK report for facopy.annot on perceval

This page was generated on 2015-08-22 17:45:00 -0700 (Sat, 22 Aug 2015).

Package 80/246HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
facopy.annot 0.103.0
David Mosen-Ansorena
Snapshot Date: 2015-08-22 06:15:25 -0700 (Sat, 22 Aug 2015)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/facopy.annot
Last Changed Rev: 3281 / Revision: 3391
Last Changed Date: 2015-04-16 13:20:43 -0700 (Thu, 16 Apr 2015)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK  OK  OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK [ OK ] OK 

Summary

Package: facopy.annot
Version: 0.103.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings facopy.annot_0.103.0.tar.gz
StartedAt: 2015-08-22 09:12:43 -0700 (Sat, 22 Aug 2015)
EndedAt: 2015-08-22 09:13:30 -0700 (Sat, 22 Aug 2015)
EllapsedTime: 47.0 seconds
RetCode: 0
Status:  OK 
CheckDir: facopy.annot.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings facopy.annot_0.103.0.tar.gz
###
##############################################################################
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* using log directory ‘/Users/biocbuild/bbs-3.2-data-experiment/meat/facopy.annot.Rcheck’
* using R version 3.2.2 Patched (2015-08-14 r69078)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘facopy.annot/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘facopy.annot’ version ‘0.103.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘facopy.annot’ can be installed ... [3s/4s] OK
* checking installed package size ... NOTE
  installed size is  6.2Mb
  sub-directories of 1Mb or more:
    data   5.9Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [5s/6s] OK
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/Users/biocbuild/bbs-3.2-data-experiment/meat/facopy.annot.Rcheck/00check.log’
for details.


facopy.annot.Rcheck/00install.out:

* installing *source* package ‘facopy.annot’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (facopy.annot)

facopy.annot.Rcheck/facopy.annot-Ex.timings:

nameusersystemelapsed
hg18_armLimits0.0290.0050.033
hg18_db_gsk_bladder0.0170.0010.018
hg18_db_gsk_blood0.0220.0020.025
hg18_db_gsk_bone0.0130.0010.016
hg18_db_gsk_brain0.0200.0010.024
hg18_db_gsk_breast0.0220.0000.028
hg18_db_gsk_cervix0.0160.0010.021
hg18_db_gsk_cns0.0220.0010.033
hg18_db_gsk_colon0.0200.0010.020
hg18_db_gsk_connective_tissue0.0150.0010.016
hg18_db_gsk_esophagus0.0180.0010.019
hg18_db_gsk_eye0.0050.0010.006
hg18_db_gsk_kidney0.0170.0010.021
hg18_db_gsk_liver0.0210.0010.024
hg18_db_gsk_lung0.0310.0010.062
hg18_db_gsk_muscle0.0170.0010.017
hg18_db_gsk_ovary0.0190.0000.019
hg18_db_gsk_pancreas0.0170.0010.017
hg18_db_gsk_pharynx0.0130.0010.013
hg18_db_gsk_placenta0.0160.0000.016
hg18_db_gsk_prostate0.0180.0000.029
hg18_db_gsk_rectum0.0140.0010.016
hg18_db_gsk_sarcoma0.0110.0010.011
hg18_db_gsk_stomach0.0220.0000.024
hg18_db_gsk_synovium0.0060.0010.007
hg18_db_gsk_thyroid0.0190.0010.019
hg18_db_gsk_uterus0.0190.0010.019
hg18_db_nci600.0250.0010.025
hg18_db_tcga_blca0.0280.0010.031
hg18_db_tcga_brca0.0280.0010.042
hg18_db_tcga_cesc0.0650.0010.091
hg18_db_tcga_coad0.0250.0000.029
hg18_db_tcga_gbm0.0270.0000.037
hg18_db_tcga_hnsc0.0260.0010.027
hg18_db_tcga_kirc0.0270.0010.027
hg18_db_tcga_kirp0.0250.0010.025
hg18_db_tcga_lgg0.0250.0010.026
hg18_db_tcga_lihc0.0270.0010.046
hg18_db_tcga_luad0.0280.0000.033
hg18_db_tcga_lusc0.0280.0000.041
hg18_db_tcga_ov0.0270.0000.028
hg18_db_tcga_prad0.0270.0000.032
hg18_db_tcga_read0.0260.0000.045
hg18_db_tcga_stad0.0260.0000.029
hg18_db_tcga_thca0.0230.0000.024
hg18_db_tcga_ucec0.0250.0010.027
hg18_feature_cancergene0.0100.0010.010
hg18_feature_ensembl0.3590.0060.506
hg18_feature_lincRNA0.0250.0020.027
hg18_feature_mirnas0.0120.0010.023
hg18_feature_oncogene0.0070.0000.007
hg18_feature_tumorsupressor0.0060.0010.010
hg19_armLimits0.0030.0000.004
hg19_db_gsk_bladder0.0180.0010.033
hg19_db_gsk_blood0.0310.0020.039
hg19_db_gsk_bone0.0150.0010.016
hg19_db_gsk_brain0.0190.0010.019
hg19_db_gsk_breast0.0280.0020.030
hg19_db_gsk_cervix0.0180.0010.020
hg19_db_gsk_cns0.0210.0010.023
hg19_db_gsk_colon0.0260.0010.028
hg19_db_gsk_connective_tissue0.0170.0000.017
hg19_db_gsk_esophagus0.0160.0000.017
hg19_db_gsk_eye0.0050.0010.005
hg19_db_gsk_kidney0.0160.0010.017
hg19_db_gsk_liver0.0240.0010.026
hg19_db_gsk_lung0.0250.0010.027
hg19_db_gsk_muscle0.0150.0000.014
hg19_db_gsk_ovary0.0180.0000.034
hg19_db_gsk_pancreas0.0180.0010.019
hg19_db_gsk_pharynx0.0150.0010.017
hg19_db_gsk_placenta0.0220.0010.023
hg19_db_gsk_prostate0.0190.0010.031
hg19_db_gsk_rectum0.0140.0010.014
hg19_db_gsk_sarcoma0.0110.0010.011
hg19_db_gsk_stomach0.0210.0010.024
hg19_db_gsk_synovium0.0040.0010.004
hg19_db_gsk_thyroid0.0170.0000.020
hg19_db_gsk_uterus0.0170.0000.018
hg19_db_nci600.0370.0010.047
hg19_db_tcga_blca0.0310.0010.033
hg19_db_tcga_brca0.0270.0010.027
hg19_db_tcga_cesc0.0320.0010.055
hg19_db_tcga_coad0.0390.0010.052
hg19_db_tcga_gbm0.0270.0000.027
hg19_db_tcga_hnsc0.0260.0000.026
hg19_db_tcga_kirc0.0300.0010.036
hg19_db_tcga_kirp0.0270.0010.042
hg19_db_tcga_lgg0.0300.0000.032
hg19_db_tcga_lihc0.0310.0010.034
hg19_db_tcga_luad0.0280.0010.042
hg19_db_tcga_lusc0.0320.0010.036
hg19_db_tcga_ov0.0260.0000.038
hg19_db_tcga_prad0.0290.0000.032
hg19_db_tcga_read0.0260.0000.027
hg19_db_tcga_stad0.0300.0000.031
hg19_db_tcga_thca0.0220.0000.023
hg19_db_tcga_ucec0.0300.0000.034
hg19_feature_cancergene0.0100.0000.013
hg19_feature_ensembl0.5940.0100.706
hg19_feature_lincRNA0.0270.0010.035
hg19_feature_mirnas0.0230.0010.024
hg19_feature_oncogene0.0060.0000.007
hg19_feature_tumorsupressor0.0070.0000.008
mm8_armLimits0.0030.0000.006
mm8_feature_ensembl0.8600.0111.026
mm8_feature_mirnas0.0160.0000.020