ceuhm3 0.8.0
VJ Carey
| Snapshot Date: 2016-04-20 09:20:20 -0700 (Wed, 20 Apr 2016) | | URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_2/experiment/pkgs/ceuhm3 | | Last Changed Rev: 3460 / Revision: 3730 | | Last Changed Date: 2015-10-13 13:14:23 -0700 (Tue, 13 Oct 2015) |
| zin1 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | OK | |  |
| moscato1 | Windows Server 2008 R2 Standard (64-bit) / x64 | NotNeeded | OK | [ WARNINGS ] | OK | |
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### Running command:
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### rm -rf ceuhm3.buildbin-libdir ceuhm3.Rcheck && mkdir ceuhm3.buildbin-libdir ceuhm3.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=ceuhm3.buildbin-libdir ceuhm3_0.8.0.tar.gz >ceuhm3.Rcheck\00install.out 2>&1 && cp ceuhm3.Rcheck\00install.out ceuhm3-install.out && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=ceuhm3.buildbin-libdir --install="check:ceuhm3-install.out" --force-multiarch --no-vignettes --timings ceuhm3_0.8.0.tar.gz
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* using log directory 'D:/biocbld/bbs-3.2-data-experiment/meat/ceuhm3.Rcheck'
* using R version 3.2.4 (2016-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ceuhm3/DESCRIPTION' ... OK
* this is package 'ceuhm3' version '0.8.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ceuhm3' can be installed ... WARNING
Found the following significant warnings:
Warning: package 'Matrix' was built under R version 3.2.5
See 'D:/biocbld/bbs-3.2-data-experiment/meat/ceuhm3.Rcheck/00install.out' for details.
* checking installed package size ... NOTE
installed size is 45.1Mb
sub-directories of 1Mb or more:
data 25.9Mb
parts 19.1Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: 'GGtools'
All declared Imports should be used.
Package in Depends field not imported from: 'GGBase'
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File 'ceuhm3/R/zzz.R':
.onLoad calls:
packageStartupMessage(paste("To get a tailored smlSet, use getSS(\"", pkgname, "\", [chrvec])", sep = ""))
packageStartupMessage("available chromosomes are named ", selectSome(cn))
See section 'Good practice' in '?.onAttach'.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... [208s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
ceuhm3-package 11.25 0.67 201.32
** running examples for arch 'x64' ... [20s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
ceuhm3-package 12.38 0.46 12.93
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 4 NOTEs
See
'D:/biocbld/bbs-3.2-data-experiment/meat/ceuhm3.Rcheck/00check.log'
for details.
install for i386
* installing *source* package 'ceuhm3' ...
** R
** data
** inst
** preparing package for lazy loading
Warning: package 'Matrix' was built under R version 3.2.5
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
Warning: package 'Matrix' was built under R version 3.2.5
install for x64
* installing *source* package 'ceuhm3' ...
** testing if installed package can be loaded
Warning: package 'Matrix' was built under R version 3.2.5
* MD5 sums
packaged installation of 'ceuhm3' as ceuhm3_0.8.0.zip
* DONE (ceuhm3)