BioC experimental data: CHECK report for RRBSdata on perceval

Package: RRBSdata

Version: 0.103.1

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings RRBSdata_0.103.1.tar.gz

StartedAt: 2015-08-22 09:57:50 -0700 (Sat, 22 Aug 2015)

EndedAt: 2015-08-22 10:04:07 -0700 (Sat, 22 Aug 2015)

EllapsedTime: 377.1 seconds

RetCode: 0

Status:  OK

CheckDir: RRBSdata.Rcheck

Warnings: 0

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings RRBSdata_0.103.1.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.2-data-experiment/meat/RRBSdata.Rcheck’
* using R version 3.2.2 Patched (2015-08-14 r69078)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘RRBSdata/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RRBSdata’ version ‘0.103.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RRBSdata’ can be installed ... [13s/17s] OK
* checking installed package size ... NOTE
  installed size is 74.0Mb
  sub-directories of 1Mb or more:
    data  73.8Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [96s/123s] OK
Examples with CPU or elapsed time > 5s
       user system elapsed
rrbs 79.547  2.674 105.728
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/Users/biocbuild/bbs-3.2-data-experiment/meat/RRBSdata.Rcheck/00check.log’
for details.

* installing *source* package ‘RRBSdata’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (RRBSdata)

name	user	system	elapsed
diffMethCpGs	1.205	0.050	1.626
islands	0.137	0.020	0.168
rrbs	79.547	2.674	105.728