Hiiragi2013 1.6.0
Andrzej Oles
| Snapshot Date: 2016-04-20 09:20:20 -0700 (Wed, 20 Apr 2016) | | URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_2/experiment/pkgs/Hiiragi2013 | | Last Changed Rev: 3460 / Revision: 3730 | | Last Changed Date: 2015-10-13 13:14:23 -0700 (Tue, 13 Oct 2015) |
| zin1 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | OK | |  |
| moscato1 | Windows Server 2008 R2 Standard (64-bit) / x64 | NotNeeded | OK | [ OK ] | OK | |
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### Running command:
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### rm -rf Hiiragi2013.buildbin-libdir Hiiragi2013.Rcheck && mkdir Hiiragi2013.buildbin-libdir Hiiragi2013.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=Hiiragi2013.buildbin-libdir Hiiragi2013_1.6.0.tar.gz >Hiiragi2013.Rcheck\00install.out 2>&1 && cp Hiiragi2013.Rcheck\00install.out Hiiragi2013-install.out && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=Hiiragi2013.buildbin-libdir --install="check:Hiiragi2013-install.out" --force-multiarch --no-vignettes --timings Hiiragi2013_1.6.0.tar.gz
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* using log directory 'D:/biocbld/bbs-3.2-data-experiment/meat/Hiiragi2013.Rcheck'
* using R version 3.2.4 (2016-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'Hiiragi2013/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'Hiiragi2013' version '1.6.0'
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Depends: includes the non-default packages:
'affy' 'Biobase' 'boot' 'clue' 'cluster' 'genefilter' 'geneplotter'
'gplots' 'gtools' 'KEGGREST' 'MASS' 'mouse4302.db' 'RColorBrewer'
'xtable'
Adding so many packages to the search path is excessive and importing
selectively is preferable.
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'Hiiragi2013' can be installed ... OK
* checking installed package size ... NOTE
installed size is 138.3Mb
sub-directories of 1Mb or more:
data 136.3Mb
doc 1.9Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Packages in Depends field not imported from:
'KEGGREST' 'affy' 'boot' 'clue' 'geneplotter' 'gtools' 'mouse4302.db'
'xtable'
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [141s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
a 23.82 0.87 51.98
MDSplot 4.71 0.10 50.57
getDifferentialExpressedGenes 3.95 0.24 8.58
** running examples for arch 'x64' ... [100s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
a 15.73 0.29 16.04
myHeatmap 5.04 0.21 11.57
MDSplot 5.05 0.08 45.89
getDifferentialExpressedGenes 4.02 0.14 7.83
pamCluster 3.27 0.07 7.63
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 3 NOTEs
See
'D:/biocbld/bbs-3.2-data-experiment/meat/Hiiragi2013.Rcheck/00check.log'
for details.
install for i386
* installing *source* package 'Hiiragi2013' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'Hiiragi2013' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Hiiragi2013' as Hiiragi2013_1.6.0.zip
* DONE (Hiiragi2013)