flowCore 1.36.0 M.Jiang
Snapshot Date: 2015-10-26 19:24:07 -0400 (Mon, 26 Oct 2015) | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/flowCore | Last Changed Rev: 109589 / Revision: 109947 | Last Changed Date: 2015-10-13 15:36:05 -0400 (Tue, 13 Oct 2015) |
| linux1.bioconductor.org | Linux (Ubuntu 14.04.2 LTS) / x86_64 | OK | ERROR | skipped | | |
windows1.bioconductor.org | Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64 | OK | ERROR | skipped | skipped | |
perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | ERROR | skipped | skipped | |
oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | OK | [ ERROR ] | skipped | skipped | |
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data flowCore
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* checking for file ‘flowCore/DESCRIPTION’ ... OK
* preparing ‘flowCore’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
Loading required package: lattice
Warning in KernSmooth::bkde2D(x, gridsize = nbin, bandwidth = bandwidth, :
Binning grid too coarse for current (small) bandwidth: consider increasing 'gridsize'
Warning in KernSmooth::bkde2D(x, gridsize = nbin, bandwidth = bandwidth, :
Binning grid too coarse for current (small) bandwidth: consider increasing 'gridsize'
Warning in KernSmooth::bkde2D(x, gridsize = nbin, bandwidth = bandwidth, :
Binning grid too coarse for current (small) bandwidth: consider increasing 'gridsize'
Warning in KernSmooth::bkde2D(x, gridsize = nbin, bandwidth = bandwidth, :
Binning grid too coarse for current (small) bandwidth: consider increasing 'gridsize'
Warning in KernSmooth::bkde2D(x, gridsize = nbin, bandwidth = bandwidth, :
Binning grid too coarse for current (small) bandwidth: consider increasing 'gridsize'
Warning in KernSmooth::bkde2D(x, gridsize = nbin, bandwidth = bandwidth, :
Binning grid too coarse for current (small) bandwidth: consider increasing 'gridsize'
Warning in KernSmooth::bkde2D(x, gridsize = nbin, bandwidth = bandwidth, :
Binning grid too coarse for current (small) bandwidth: consider increasing 'gridsize'
Warning in KernSmooth::bkde2D(x, gridsize = nbin, bandwidth = bandwidth, :
Binning grid too coarse for current (small) bandwidth: consider increasing 'gridsize'
Warning in KernSmooth::bkde2D(x, gridsize = nbin, bandwidth = bandwidth, :
Binning grid too coarse for current (small) bandwidth: consider increasing 'gridsize'
Warning in KernSmooth::bkde2D(x, gridsize = nbin, bandwidth = bandwidth, :
Binning grid too coarse for current (small) bandwidth: consider increasing 'gridsize'
Warning in KernSmooth::bkde2D(x, gridsize = nbin, bandwidth = bandwidth, :
Binning grid too coarse for current (small) bandwidth: consider increasing 'gridsize'
Warning in KernSmooth::bkde2D(x, gridsize = nbin, bandwidth = bandwidth, :
Binning grid too coarse for current (small) bandwidth: consider increasing 'gridsize'
Warning in KernSmooth::bkde2D(x, gridsize = nbin, bandwidth = bandwidth, :
Binning grid too coarse for current (small) bandwidth: consider increasing 'gridsize'
Warning in KernSmooth::bkde2D(x, gridsize = nbin, bandwidth = bandwidth, :
Binning grid too coarse for current (small) bandwidth: consider increasing 'gridsize'
Warning in KernSmooth::bkde2D(x, gridsize = nbin, bandwidth = bandwidth, :
Binning grid too coarse for current (small) bandwidth: consider increasing 'gridsize'
Warning in KernSmooth::bkde2D(x, gridsize = nbin, bandwidth = bandwidth, :
Binning grid too coarse for current (small) bandwidth: consider increasing 'gridsize'
Warning in KernSmooth::bkde2D(x, gridsize = nbin, bandwidth = bandwidth, :
Binning grid too coarse for current (small) bandwidth: consider increasing 'gridsize'
Warning in KernSmooth::bkde2D(x, gridsize = nbin, bandwidth = bandwidth, :
Binning grid too coarse for current (small) bandwidth: consider increasing 'gridsize'
Warning in KernSmooth::bkde2D(x, gridsize = nbin, bandwidth = bandwidth, :
Binning grid too coarse for current (small) bandwidth: consider increasing 'gridsize'
Warning in KernSmooth::bkde2D(x, gridsize = nbin, bandwidth = bandwidth, :
Binning grid too coarse for current (small) bandwidth: consider increasing 'gridsize'
Warning in KernSmooth::bkde2D(x, gridsize = nbin, bandwidth = bandwidth, :
Binning grid too coarse for current (small) bandwidth: consider increasing 'gridsize'
Warning in KernSmooth::bkde2D(x, gridsize = nbin, bandwidth = bandwidth, :
Binning grid too coarse for current (small) bandwidth: consider increasing 'gridsize'
Warning in KernSmooth::bkde2D(x, gridsize = nbin, bandwidth = bandwidth, :
Binning grid too coarse for current (small) bandwidth: consider increasing 'gridsize'
Warning in KernSmooth::bkde2D(x, gridsize = nbin, bandwidth = bandwidth, :
Binning grid too coarse for current (small) bandwidth: consider increasing 'gridsize'
Warning in KernSmooth::bkde2D(x, gridsize = nbin, bandwidth = bandwidth, :
Binning grid too coarse for current (small) bandwidth: consider increasing 'gridsize'
Warning in KernSmooth::bkde2D(x, gridsize = nbin, bandwidth = bandwidth, :
Binning grid too coarse for current (small) bandwidth: consider increasing 'gridsize'
Warning in KernSmooth::bkde2D(x, gridsize = nbin, bandwidth = bandwidth, :
Binning grid too coarse for current (small) bandwidth: consider increasing 'gridsize'
Warning in KernSmooth::bkde2D(x, gridsize = nbin, bandwidth = bandwidth, :
Binning grid too coarse for current (small) bandwidth: consider increasing 'gridsize'
Warning in KernSmooth::bkde2D(x, bandwidth = bandwidth, gridsize = nbin, :
Binning grid too coarse for current (small) bandwidth: consider increasing 'gridsize'
Loading required package: ncdfFlow
Loading required package: RcppArmadillo
Loading required package: BH
Loading required package: gridExtra
Warning in .load_gs(output = path, files = files) :
Boost serialization format is to be deprecated. Try to resave it with 'google protocol buffer' (lib = 'PB')!
loading R object...
loading tree object...
Done
..done!
replicating filter 'NonDebris' across samples!
..done!
replicating filter 'defaultPolygonGate' across samples!
replicating filter 'defaultRectangleGate' across samples!
replicating filter 'defaultQuadGate' across samples!
..done!
Loading required package: Rgraphviz
Loading required package: graph
Loading required package: grid
sROC 0.1-2 loaded
Error : object ‘drvkde’ is not exported by 'namespace:ks'
In addition: Warning messages:
1: In rgl.init(initValue, onlyNULL) : RGL: GLX extension missing on server
2: In fun(libname, pkgname) : Error in 'rgl_init'
Error: processing vignette 'HowTo-flowCore.Rnw' failed with diagnostics:
chunk 60 (label = openCyto-nonDebris)
Error : package or namespace load failed for ‘openCyto’
Execution halted