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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:ttgsea.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings ttgsea_1.2.1.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.14-bioc/meat/ttgsea.Rcheck’
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-apple-darwin17.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ttgsea/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ttgsea’ version ‘1.2.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ttgsea’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                user system elapsed
predict_model 36.993  7.176  23.952
fit_model     35.856  5.140  25.110
text_token    19.674  2.739  11.673
token_vector  11.015  0.830  11.659
bi_gru         6.615  0.974   7.691
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL ttgsea
###
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library’
* installing *source* package ‘ttgsea’ ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ttgsea)

R version 4.1.3 (2022-03-10) -- "One Push-Up"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin17.0 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(ttgsea)
Loading required package: keras
> 
> test_check("ttgsea")
2022-04-12 19:45:46.958995: I tensorflow/compiler/xla/service/service.cc:168] XLA service 0x7ffdf7402070 initialized for platform Host (this does not guarantee that XLA will be used). Devices:
2022-04-12 19:45:46.959064: I tensorflow/compiler/xla/service/service.cc:176]   StreamExecutor device (0): Host, Default Version

 1/45 [..............................] - ETA: 0s - loss: 1.7154 - pearson_correlation: 0.1044
 2/45 [>.............................] - ETA: 1s - loss: 1.6588 - pearson_correlation: 0.0428
 3/45 [=>............................] - ETA: 1s - loss: 1.7404 - pearson_correlation: 0.0977
 4/45 [=>............................] - ETA: 1s - loss: 1.6892 - pearson_correlation: 0.0166
 6/45 [===>..........................] - ETA: 1s - loss: 1.5953 - pearson_correlation: 0.0029
 8/45 [====>.........................] - ETA: 1s - loss: 1.6064 - pearson_correlation: 0.0463
10/45 [=====>........................] - ETA: 1s - loss: 1.5902 - pearson_correlation: -0.0073
12/45 [=======>......................] - ETA: 1s - loss: 1.5866 - pearson_correlation: -0.0310
14/45 [========>.....................] - ETA: 1s - loss: 1.6085 - pearson_correlation: -0.0311
16/45 [=========>....................] - ETA: 1s - loss: 1.5893 - pearson_correlation: -0.0185
18/45 [===========>..................] - ETA: 1s - loss: 1.5996 - pearson_correlation: -0.0284
20/45 [============>.................] - ETA: 1s - loss: 1.5825 - pearson_correlation: -0.0152
22/45 [=============>................] - ETA: 0s - loss: 1.5999 - pearson_correlation: 0.0072 
24/45 [===============>..............] - ETA: 0s - loss: 1.5942 - pearson_correlation: 0.0234
26/45 [================>.............] - ETA: 0s - loss: 1.6151 - pearson_correlation: 0.0267
28/45 [=================>............] - ETA: 0s - loss: 1.6083 - pearson_correlation: 0.0546
30/45 [===================>..........] - ETA: 0s - loss: 1.6019 - pearson_correlation: 0.0743
32/45 [====================>.........] - ETA: 0s - loss: 1.5883 - pearson_correlation: 0.0924
34/45 [=====================>........] - ETA: 0s - loss: 1.5833 - pearson_correlation: 0.0903
36/45 [=======================>......] - ETA: 0s - loss: 1.5798 - pearson_correlation: 0.0823
38/45 [========================>.....] - ETA: 0s - loss: 1.5808 - pearson_correlation: 0.0770
40/45 [=========================>....] - ETA: 0s - loss: 1.5767 - pearson_correlation: 0.0869
42/45 [===========================>..] - ETA: 0s - loss: 1.5755 - pearson_correlation: 0.0938
44/45 [============================>.] - ETA: 0s - loss: 1.5608 - pearson_correlation: 0.0967
45/45 [==============================] - 2s 42ms/step - loss: 1.5641 - pearson_correlation: 0.1008
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 13 ]
> 
> proc.time()
   user  system elapsed 
 38.784   8.361  32.044