Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:07:29 -0400 (Wed, 13 Apr 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the tofsims package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to [email protected]:packages/tofsims.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1970/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
tofsims 1.22.0 (landing page) Lorenz Gerber
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: tofsims |
Version: 1.22.0 |
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/tofsims_1.22.0.tar.gz && rm -rf tofsims.buildbin-libdir && mkdir tofsims.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=tofsims.buildbin-libdir tofsims_1.22.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL tofsims_1.22.0.zip && rm tofsims_1.22.0.tar.gz tofsims_1.22.0.zip |
StartedAt: 2022-04-12 04:36:18 -0400 (Tue, 12 Apr 2022) |
EndedAt: 2022-04-12 04:40:38 -0400 (Tue, 12 Apr 2022) |
EllapsedTime: 259.2 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/tofsims_1.22.0.tar.gz && rm -rf tofsims.buildbin-libdir && mkdir tofsims.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=tofsims.buildbin-libdir tofsims_1.22.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL tofsims_1.22.0.zip && rm tofsims_1.22.0.tar.gz tofsims_1.22.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 106k 100 106k 0 0 225k 0 --:--:-- --:--:-- --:--:-- 226k install for i386 * installing *source* package 'tofsims' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c LapackEigen.cpp -o LapackEigen.o "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c c_importer.cpp -o c_importer.o "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c nn.cpp -o nn.o "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c readRawPhi.cpp -o readRawPhi.o "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c utilities.cpp -o utilities.o C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o tofsims.dll tmp.def LapackEigen.o RcppExports.o c_importer.o nn.o readRawPhi.o utilities.o -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lRblas -lgfortran -lm -lquadmath -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lRlapack -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/tofsims.buildbin-libdir/00LOCK-tofsims/00new/tofsims/libs/i386 ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'tofsims' finding HTML links ... done EigenDecompose html LapackGenEigen html MAF html MCR html MNF html MassImage html MassSpectra html PCA-class html PCAnalysis html PeakList html PrComp html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/tofsims.buildbin-libdir/00LOCK-tofsims/00new/tofsims/help/prComp.html PrinComp html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/tofsims.buildbin-libdir/00LOCK-tofsims/00new/tofsims/help/prinComp.html RSS-MCR-method html RSS html SNR html addFixedWidth html addPeaks html analysis html finding level-2 HTML links ... done analysisName html baseObject-PrComp-method html baseObject-PrinComp-method html baseObject html binning html bwApply html cReadRawPhi html calibPointNew html calibPoints html calibration html changePeakWidth html check.extension html computeMNF html computeNoise html coordToPixel-MassImage-numeric-method html coordToPixel html covDiffCalc html ctable html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/tofsims.buildbin-libdir/00LOCK-tofsims/00new/tofsims/help/cTable.html dim-MassImage-method html dim-MassSpectra-method html extract.header.data html findClosestMatch html findPeakWidth html getTOFs html image html imageMatrix html import html import.raw html instrument html iters-MCR-method html iters html itzipName-set html itzipName html legend.col html look.for.itzip.property html makeTIC-MassSpectra-method html makeTIC html manualSelectPeaks html mz html nComp html nPeaks html ndim-MassSpectra-method html ndim html nearestNeighbourMean html nnMNF html nnMean html noPlottingData-PCA-method html noPlottingData html nz html overlayPlot html parIndicesSearch html pcaLoadings html pcaMAF html pcaScores html peakIDs html peakMzs html peakPick html peakWidths html peaks2Spectra html plot-MassImage-missing-method html plot-PeakList-missing-method html plot html points html poissonScaling html readBIF html recalibrate html reduceSpectrumResolution html removePeaks html resids-MCR-method html resids html scale html show-MassImage-method html show-MassSpectra-method html show-PeakList-method html smoothScatter html smootherGolay html smootherSpline html subset html tofsims-package html unitMassPeaks html validMassImageObject html validMassSpectraObject html validPCAObject html validPeakListObject html xdim-MassImage-method html xdim-PCA-method html xdim-set html xdim html xy html xySpec html ydim-MassImage-method html ydim-PCA-method html ydim-set html ydim html zdim-MassSpectra-method html zdim html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'tofsims' ... ** libs "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c LapackEigen.cpp -o LapackEigen.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c c_importer.cpp -o c_importer.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c nn.cpp -o nn.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c readRawPhi.cpp -o readRawPhi.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c utilities.cpp -o utilities.o C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o tofsims.dll tmp.def LapackEigen.o RcppExports.o c_importer.o nn.o readRawPhi.o utilities.o -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lRlapack -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/tofsims.buildbin-libdir/tofsims/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'tofsims' as tofsims_1.22.0.zip * DONE (tofsims) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'tofsims' successfully unpacked and MD5 sums checked