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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/surfaltr_1.0.0.tar.gz && rm -rf surfaltr.buildbin-libdir && mkdir surfaltr.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=surfaltr.buildbin-libdir surfaltr_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL surfaltr_1.0.0.zip && rm surfaltr_1.0.0.tar.gz surfaltr_1.0.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  4 3169k    4  151k    0     0   501k      0  0:00:06 --:--:--  0:00:06  501k
 43 3169k   43 1391k    0     0  1065k      0  0:00:02  0:00:01  0:00:01 1065k
100 3169k  100 3169k    0     0  1469k      0  0:00:02  0:00:02 --:--:-- 1470k

install for i386

* installing *source* package 'surfaltr' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'surfaltr'
    finding HTML links ... done
    Crb1                                    html  
    align_org_prts                          html  
    align_prts                              html  
    check_tmhmm_install                     html  
    clean_data                              html  
    ensembl_db_retrieval                    html  
    format_ids                              html  
    get_aas                                 html  
    get_pairs                               html  
    get_phobius                             html  
    get_prts                                html  
    get_tmhmm                               html  
    graph_from_aas                          html  
    graph_from_ids                          html  
    graph_prots                             html  
    hpa_genes                               html  
    hpa_mouse_genes                         html  
    merge_trans                             html  
    plot_isoforms                           html  
    process_tmhmm                           html  
    rank_prts                               html  
    run_phobius                             html  
    split_fasta                             html  
    test_surfaltr                           html  
    tmhmm_fix_path                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'surfaltr' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'surfaltr' as surfaltr_1.0.0.zip
* DONE (surfaltr)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'surfaltr' successfully unpacked and MD5 sums checked