############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/spiky_1.0.0.tar.gz && rm -rf spiky.buildbin-libdir && mkdir spiky.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=spiky.buildbin-libdir spiky_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL spiky_1.0.0.zip && rm spiky_1.0.0.tar.gz spiky_1.0.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 2 4742k 2 101k 0 0 445k 0 0:00:10 --:--:-- 0:00:10 444k 25 4742k 25 1210k 0 0 983k 0 0:00:04 0:00:01 0:00:03 983k 67 4742k 67 3181k 0 0 1424k 0 0:00:03 0:00:02 0:00:01 1423k 100 4742k 100 4742k 0 0 1697k 0 0:00:02 0:00:02 --:--:-- 1697k install for i386 Warning in untar2(tarfile, files, list, exdir, restore_times) : failed to copy 'spiky/inst/extdata/spikes.fa' to 'spiky/inst/extdata/cfMeDIPspikes.fa' * installing *source* package 'spiky' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'spiky' finding HTML links ... done add_frag_info html bam_to_bins html bin_pmol html covg_to_df html dedup html find_spike_contigs html genbank_mito html generate_spike_fasta html get_base_name html get_binned_coverage html get_merged_gr html get_spike_depth html get_spiked_coverage html kmax html kmers html methylation_specificity html model_bam_standards html model_glm_pmol html parse_spike_UMI html phage html predict_pmol html process_spikes html rename_spike_seqlevels html rename_spikes html scan_genomic_contigs html scan_methylation_specificity html scan_spike_contigs html scan_spike_counts html scan_spiked_bam html seqinfo_from_header html spike html spike_bland_altman_plot html spike_counts html spike_cram_counts html spike_read_counts html spiky-methods html ssb_res html testGR html tile_bins html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 Warning in untar2(tarfile, files, list, exdir, restore_times) : failed to copy 'spiky/inst/extdata/spikes.fa' to 'spiky/inst/extdata/cfMeDIPspikes.fa' * installing *source* package 'spiky' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'spiky' as spiky_1.0.0.zip * DONE (spiky) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'spiky' successfully unpacked and MD5 sums checked