Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:07:17 -0400 (Wed, 13 Apr 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the sarks package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to [email protected]:packages/sarks.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1694/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
sarks 1.6.0 (landing page) Dennis Wylie
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: sarks |
Version: 1.6.0 |
Command: C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe --arch x64 CMD check --no-multiarch --install=check:sarks.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings sarks_1.6.0.tar.gz |
StartedAt: 2022-04-13 02:14:48 -0400 (Wed, 13 Apr 2022) |
EndedAt: 2022-04-13 02:16:31 -0400 (Wed, 13 Apr 2022) |
EllapsedTime: 102.7 seconds |
RetCode: 0 |
Status: OK |
CheckDir: sarks.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe --arch x64 CMD check --no-multiarch --install=check:sarks.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings sarks_1.6.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/sarks.Rcheck' * using R version 4.1.3 (2022-03-10) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'sarks/DESCRIPTION' ... OK * this is package 'sarks' version '1.6.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... NOTE Found the following hidden files and directories: .BBSoptions These were most likely included in error. See section 'Package structure' in the 'Writing R Extensions' manual. * checking for portable file names ... OK * checking whether package 'sarks' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... Running 'runTests.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See 'C:/Users/biocbuild/bbs-3.14-bioc/meat/sarks.Rcheck/00check.log' for details.
sarks.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe --arch x64 CMD INSTALL --no-multiarch sarks ### ############################################################################## ############################################################################## * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' * installing *source* package 'sarks' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'sarks' finding HTML links ... done Sarks html blockInfo html blockScores html clusterCounts html clusterKmers html estimateFalsePositiveRate html extendKmers html kmerCounts html kmerPeaks html locateClusters html locateKmers html mergedKmerSubPeaks html permutationDistribution html permutationThresholds html pruneIntervals html regexCounts html regexLocate html sarksFilters html simulatedScores html simulatedSeqs html sourceBlock html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sarks) Making 'packages.html' ... done
sarks.Rcheck/tests/runTests.Rout
R version 4.1.3 (2022-03-10) -- "One Push-Up" Copyright (C) 2022 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > BiocGenerics:::testPackage('sarks') RUNIT TEST PROTOCOL -- Wed Apr 13 02:16:23 2022 *********************************************** Number of test functions: 5 Number of errors: 0 Number of failures: 0 1 Test Suite : sarks RUnit Tests - 5 test functions, 0 errors, 0 failures Number of test functions: 5 Number of errors: 0 Number of failures: 0 > > proc.time() user system elapsed 6.85 0.31 6.57
sarks.Rcheck/sarks-Ex.timings
name | user | system | elapsed | |
Sarks | 0.12 | 0.02 | 0.14 | |
blockInfo | 0.63 | 0.06 | 0.33 | |
blockScores | 0.04 | 0.00 | 0.03 | |
clusterCounts | 0 | 0 | 0 | |
clusterKmers | 1.84 | 0.00 | 1.84 | |
estimateFalsePositiveRate | 0.30 | 0.02 | 0.21 | |
extendKmers | 0.44 | 0.06 | 0.25 | |
kmerCounts | 0.01 | 0.00 | 0.01 | |
kmerPeaks | 0.21 | 0.00 | 0.13 | |
locateClusters | 0.06 | 0.00 | 0.01 | |
locateKmers | 0.06 | 0.00 | 0.02 | |
mergedKmerSubPeaks | 0.41 | 0.00 | 0.23 | |
permutationDistribution | 0.18 | 0.00 | 0.10 | |
permutationThresholds | 0.29 | 0.02 | 0.11 | |
pruneIntervals | 0.36 | 0.00 | 0.14 | |
regexCounts | 0.01 | 0.00 | 0.01 | |
regexLocate | 0.00 | 0.01 | 0.02 | |
sarksFilters | 0.09 | 0.00 | 0.09 | |
sourceBlock | 0.00 | 0.02 | 0.02 | |