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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:rnaseqcomp.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings rnaseqcomp_1.24.0.tar.gz
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* using log directory 鈥�/Users/biocbuild/bbs-3.14-bioc/meat/rnaseqcomp.Rcheck鈥�
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-apple-darwin17.0 (64-bit)
* using session charset: UTF-8
* using option 鈥�--no-vignettes鈥�
* checking for file 鈥榬naseqcomp/DESCRIPTION鈥� ... OK
* this is package 鈥榬naseqcomp鈥� version 鈥�1.24.0鈥�
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 鈥榬naseqcomp鈥� can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 鈥榖uild鈥� directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
plot2TX: no visible global function definition for 鈥榣ines鈥�
plot2TX: no visible global function definition for 鈥榖ox鈥�
plot2TX: no visible global function definition for 鈥榣egend鈥�
plot2TX : <anonymous>: no visible binding for global variable 鈥榮d鈥�
plot2TX : <anonymous>: no visible global function definition for 鈥榮d鈥�
plotFC: no visible global function definition for 鈥榣oess.smooth鈥�
plotFC: no visible global function definition for 鈥榣ines鈥�
plotFC: no visible global function definition for 鈥榣egend鈥�
plotFC : <anonymous>: no visible global function definition for
  鈥榤edian鈥�
plotFC : <anonymous>: no visible global function definition for 鈥榮d鈥�
plotNE: no visible global function definition for 鈥榣ines鈥�
plotNE: no visible global function definition for 鈥榩oints鈥�
plotNE: no visible global function definition for 鈥榖ox鈥�
plotNE: no visible global function definition for 鈥榣egend鈥�
plotROC: no visible global function definition for 鈥榤edian鈥�
plotROC: no visible global function definition for 鈥榮d鈥�
plotROC: no visible global function definition for 鈥榣ines鈥�
plotROC: no visible global function definition for 鈥榓rrows鈥�
plotROC: no visible global function definition for 鈥榓bline鈥�
plotROC: no visible global function definition for 鈥榣egend鈥�
plotSD : <anonymous>: no visible binding for global variable 鈥榮d鈥�
plotSD: no visible global function definition for 鈥榣oess.smooth鈥�
plotSD: no visible global function definition for 鈥榣ines鈥�
plotSD: no visible global function definition for 鈥榖ox鈥�
plotSD: no visible global function definition for 鈥榣egend鈥�
plotSD : <anonymous> : <anonymous>: no visible global function
  definition for 鈥榤edian鈥�
plotSD : <anonymous> : <anonymous>: no visible global function
  definition for 鈥榤ad鈥�
signalCalibrate : <anonymous>: no visible binding for global variable
  鈥榤edian鈥�
signalCalibrate: no visible global function definition for 鈥榤edian鈥�
Undefined global functions or variables:
  abline arrows box legend lines loess.smooth mad median points sd
Consider adding
  importFrom("graphics", "abline", "arrows", "box", "legend", "lines",
             "points")
  importFrom("stats", "loess.smooth", "mad", "median", "sd")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 鈥榙ata鈥� directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 鈥榲ignettes鈥� ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
         user system elapsed
plotROC 9.051  2.743  11.798
plotNE  4.077  1.149   5.228
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 鈥榠nst/doc鈥� ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  鈥�/Users/biocbuild/bbs-3.14-bioc/meat/rnaseqcomp.Rcheck/00check.log鈥�
for details.