Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:08:36 -0400 (Wed, 13 Apr 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the ramwas package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to [email protected]:packages/ramwas.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1524/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
ramwas 1.18.0 (landing page) Andrey A Shabalin
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: ramwas |
Version: 1.18.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:ramwas.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings ramwas_1.18.0.tar.gz |
StartedAt: 2022-04-12 17:17:50 -0400 (Tue, 12 Apr 2022) |
EndedAt: 2022-04-12 17:23:22 -0400 (Tue, 12 Apr 2022) |
EllapsedTime: 331.6 seconds |
RetCode: 0 |
Status: OK |
CheckDir: ramwas.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:ramwas.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings ramwas_1.18.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.14-bioc/meat/ramwas.Rcheck’ * using R version 4.1.3 (2022-03-10) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘ramwas/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘ramwas’ version ‘1.18.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘ramwas’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... NOTE Note: information on .o files is not available * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed manhattan 10.456 0.703 11.238 getCpGset 5.016 0.278 5.340 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/Users/biocbuild/bbs-3.14-bioc/meat/ramwas.Rcheck/00check.log’ for details.
ramwas.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL ramwas ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library’ * installing *source* package ‘ramwas’ ... ** using staged installation ** libs clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c rw_c_code.c -o rw_c_code.o clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o ramwas.so rw_c_code.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Library/Frameworks/R.framework/Versions/4.1/Resources/library/00LOCK-ramwas/00new/ramwas/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ramwas)
ramwas.Rcheck/ramwas-Ex.timings
name | user | system | elapsed | |
MakeBED | 0.001 | 0.000 | 0.001 | |
QCs | 0.049 | 0.007 | 0.056 | |
cachedRDSload | 1.506 | 0.003 | 1.511 | |
findBestNpvs | 0.002 | 0.001 | 0.002 | |
get | 0.000 | 0.000 | 0.001 | |
getCpGset | 5.016 | 0.278 | 5.340 | |
injectSNPsMAF | 0.811 | 0.015 | 0.827 | |
insilicoFASTQ | 0.003 | 0.001 | 0.003 | |
isAbsolutePath | 0.001 | 0.001 | 0.001 | |
makefullpath | 0.001 | 0.001 | 0.001 | |
manhattan | 10.456 | 0.703 | 11.238 | |
mat2cols | 0.001 | 0.001 | 0.002 | |
orthonormalizeCovariates | 0.013 | 0.002 | 0.015 | |
parameterDump | 0.004 | 0.002 | 0.006 | |
parameterPreprocess | 0.008 | 0.008 | 0.020 | |
parametersFromFile | 0.002 | 0.001 | 0.003 | |
pipeline | 0.002 | 0.001 | 0.003 | |
plotCV | 2.667 | 0.050 | 2.727 | |
plotFragmentSizeDistributionEstimate | 0.044 | 0.003 | 0.048 | |
plotPC | 0.013 | 0.003 | 0.016 | |
processCommandLine | 0.002 | 0.001 | 0.002 | |
pvalue2qvalue | 0.001 | 0.000 | 0.001 | |
qqplotFast | 2.003 | 0.318 | 2.325 | |
ramwas0createArtificialData | 0.347 | 0.053 | 0.401 | |
ramwasAnnotateLocations | 0.001 | 0.000 | 0.001 | |
ramwasParameters | 0.000 | 0.000 | 0.001 | |
rowcolSumSq | 0.001 | 0.000 | 0.001 | |
rwDataClass-class | 0.077 | 0.000 | 0.077 | |
subsetData | 0 | 0 | 0 | |
testPhenotype | 0.028 | 0.003 | 0.031 | |