############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/ptairMS_1.2.0.tar.gz && rm -rf ptairMS.buildbin-libdir && mkdir ptairMS.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ptairMS.buildbin-libdir ptairMS_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL ptairMS_1.2.0.zip && rm ptairMS_1.2.0.tar.gz ptairMS_1.2.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 705k 100 705k 0 0 940k 0 --:--:-- --:--:-- --:--:-- 941k install for i386 * installing *source* package 'ptairMS' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c align.cpp -o align.o "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c findEqualGreaterM.cpp -o findEqualGreaterM.o C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o ptairMS.dll tmp.def RcppExports.o align.o findEqualGreaterM.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/ptairMS.buildbin-libdir/00LOCK-ptairMS/00new/ptairMS/libs/i386 ** R ** inst ** byte-compile and prepare package for lazy loading in method for 'annotateVOC' with signature '"ExpressionSet"': no definition for class "ExpressionSet" in method for 'writeEset' with signature '"ExpressionSet"': no definition for class "ExpressionSet" ** help *** installing help indices converting help for package 'ptairMS' finding HTML links ... done LocalMaximaSG html OptimalWindowsSG html PeakList html TransmissionCurve html aggregate html align html alignSamples html annotation html calibration html calibrationFun html changeTimeLimits html convert_to_mzML html createPtrSet html cumulative_fit_function html deadTimeCorr html defineKnots html detectPeak html determinePeakShape html exportSampleMetada html extractEIC html fit_averagePeak html fit_averagePeak_function html formula2mass html getDirectory html getFileNames html getPeakList html getSampleMetadata html importSampleMetadata html impute html imputeMat html initializeFit html makeSubGroup html plot html plotCalib html plotFeatures html plotPeakShape html plotRaw html plotTIC html ptairMS-package html ptrRaw html ptrSet html readRaw html resetSampleMetadata html rmPeakList html setSampleMetadata html show-ptrRaw-method html show-ptrSet-method html snipBase html timeLimits html updatePtrSet html width html writeEset html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'ptairMS' ... ** libs "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c align.cpp -o align.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c findEqualGreaterM.cpp -o findEqualGreaterM.o C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o ptairMS.dll tmp.def RcppExports.o align.o findEqualGreaterM.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/ptairMS.buildbin-libdir/ptairMS/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'ptairMS' as ptairMS_1.2.0.zip * DONE (ptairMS) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'ptairMS' successfully unpacked and MD5 sums checked