Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:06:51 -0400 (Wed, 13 Apr 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the metabCombiner package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to [email protected]:packages/metabCombiner.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1090/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
metabCombiner 1.4.0 (landing page) Hani Habra
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: metabCombiner |
Version: 1.4.0 |
Command: rm -rf metabCombiner.buildbin-libdir && mkdir metabCombiner.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=metabCombiner.buildbin-libdir metabCombiner_1.4.0.tar.gz |
StartedAt: 2022-04-13 06:32:46 -0400 (Wed, 13 Apr 2022) |
EndedAt: 2022-04-13 06:34:17 -0400 (Wed, 13 Apr 2022) |
EllapsedTime: 91.0 seconds |
RetCode: 0 |
Status: OK |
PackageFile: metabCombiner_1.4.0.zip |
PackageFileSize: 2.916 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf metabCombiner.buildbin-libdir && mkdir metabCombiner.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=metabCombiner.buildbin-libdir metabCombiner_1.4.0.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'metabCombiner' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c binByMZ.c -o binByMZ.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c findDuplicates.c -o findDuplicates.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c labelRows.c -o labelRows.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c metabCombiner_init.c -o metabCombiner_init.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c resolveRows.c -o resolveRows.o resolveRows.c: In function 'resolveRows': resolveRows.c:250:6: warning: variable 'sgnum' set but not used [-Wunused-but-set-variable] int sgnum = 0; ^~~~~ resolveRows.c:249:14: warning: unused variable 'filename' [-Wunused-variable] const char *filename = "output.txt"; ^~~~~~~~ "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c selectAnchors.c -o selectAnchors.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c write2file.c -o write2file.o C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o metabCombiner.dll tmp.def binByMZ.o findDuplicates.o labelRows.o metabCombiner_init.o resolveRows.o selectAnchors.o write2file.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/metabCombiner.buildbin-libdir/00LOCK-metabCombiner/00new/metabCombiner/libs/i386 ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'metabCombiner' finding HTML links ... done Qdata html adductdata html adjustData html batchCombine html calcScores html calcScoresParam html combinedTable html combinerCheck html crossValFit html datasets html detectFields html evaluateParams html featdata html filterAnchors html filterRT html findDuplicates html fit_gam html fit_loess html fitgamParam html fitloessParam html getAnchors html getCoefficients html getData html getExtra html getModel html getSamples html getStats html iddata html identityAnchorSelection html isCombinedTable html isMetabCombiner html isMetabData html iterativeAnchorSelection html labelRows html labelRowsParam html metabBatches html metabCombine html metabCombiner-class html metabCombiner html metabData-class html metabData html mzGroup html mzdata html nonmatched html objective html plasma20 html plasma30 html plot_fit html rtdata html scorePairs html selectAnchors html selectAnchorsParam html write2file html x html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'metabCombiner' ... ** libs "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c binByMZ.c -o binByMZ.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c findDuplicates.c -o findDuplicates.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c labelRows.c -o labelRows.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c metabCombiner_init.c -o metabCombiner_init.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c resolveRows.c -o resolveRows.o resolveRows.c: In function 'resolveRows': resolveRows.c:250:6: warning: variable 'sgnum' set but not used [-Wunused-but-set-variable] int sgnum = 0; ^~~~~ resolveRows.c:249:14: warning: unused variable 'filename' [-Wunused-variable] const char *filename = "output.txt"; ^~~~~~~~ "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c selectAnchors.c -o selectAnchors.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c write2file.c -o write2file.o C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o metabCombiner.dll tmp.def binByMZ.o findDuplicates.o labelRows.o metabCombiner_init.o resolveRows.o selectAnchors.o write2file.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/metabCombiner.buildbin-libdir/metabCombiner/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'metabCombiner' as metabCombiner_1.4.0.zip * DONE (metabCombiner)