Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2022-04-13 12:06:43 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for iCOBRA on tokay2


To the developers/maintainers of the iCOBRA package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to [email protected]:packages/iCOBRA.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 909/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
iCOBRA 1.22.2  (landing page)
Charlotte Soneson
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/iCOBRA
git_branch: RELEASE_3_14
git_last_commit: b9283c0
git_last_commit_date: 2021-12-18 09:26:05 -0400 (Sat, 18 Dec 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: iCOBRA
Version: 1.22.2
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/iCOBRA_1.22.2.tar.gz && rm -rf iCOBRA.buildbin-libdir && mkdir iCOBRA.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=iCOBRA.buildbin-libdir iCOBRA_1.22.2.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL iCOBRA_1.22.2.zip && rm iCOBRA_1.22.2.tar.gz iCOBRA_1.22.2.zip
StartedAt: 2022-04-12 07:35:33 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 07:37:53 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 139.9 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/iCOBRA_1.22.2.tar.gz && rm -rf iCOBRA.buildbin-libdir && mkdir iCOBRA.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=iCOBRA.buildbin-libdir iCOBRA_1.22.2.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL iCOBRA_1.22.2.zip && rm iCOBRA_1.22.2.tar.gz iCOBRA_1.22.2.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 32 2492k   32  804k    0     0  1247k      0  0:00:01 --:--:--  0:00:01 1248k
100 2492k  100 2492k    0     0  1752k      0  0:00:01  0:00:01 --:--:-- 1753k

install for i386

* installing *source* package 'iCOBRA' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'iCOBRA'
    finding HTML links ... done
    COBRAData                               html  
    COBRAPerformance                        html  
    COBRAPlot                               html  
    COBRAapp                                html  
    Extract                                 html  
    basemethods                             html  
    calculate_adjp                          html  
    calculate_performance                   html  
    cobradata_example                       html  
    cobradata_example_sval                  html  
    coerce                                  html  
    corr                                    html  
    deviation                               html  
    facetted                                html  
    fdrnbr                                  html  
    fdrnbrcurve                             html  
    fdrtpr                                  html  
    fdrtprcurve                             html  
    fpc                                     html  
    fpr                                     html  
    fsrnbr                                  html  
    fsrnbrcurve                             html  
    maxsplit                                html  
    onlyshared                              html  
    overlap                                 html  
    padj                                    html  
    plot_corr                               html  
    plot_deviation                          html  
    plot_fdrnbrcurve                        html  
    plot_fdrtprcurve                        html  
    plot_fpc                                html  
    plot_fpr                                html  
    plot_fsrnbrcurve                        html  
    plot_overlap                            html  
    plot_roc                                html  
    plot_scatter                            html  
    plot_tpr                                html  
    plot_upset                              html  
    plotcolors                              html  
    prepare_data_for_plot                   html  
    pval                                    html  
    reorder_levels                          html  
    roc                                     html  
    scatter                                 html  
    score                                   html  
    splv                                    html  
    stratiflevels                           html  
    sval                                    html  
    tpr                                     html  
    truth                                   html  
    update_cobradata                        html  
    update_cobraperformance                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'iCOBRA' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'iCOBRA' as iCOBRA_1.22.2.zip
* DONE (iCOBRA)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'iCOBRA' successfully unpacked and MD5 sums checked