############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/graph_1.72.0.tar.gz && rm -rf graph.buildbin-libdir && mkdir graph.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=graph.buildbin-libdir graph_1.72.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL graph_1.72.0.zip && rm graph_1.72.0.tar.gz graph_1.72.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 327k 100 327k 0 0 454k 0 --:--:-- --:--:-- --:--:-- 454k install for i386 * installing *source* package 'graph' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c graph.c -o graph.o C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o graph.dll tmp.def graph.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR mv graph.dll BioC_graph.dll installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/graph.buildbin-libdir/00LOCK-graph/00new/graph/libs/i386 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'graph' finding HTML links ... done DFS html IMCA html MAPKsig html MultiGraph-class html acc-methods html addEdge html addNode html adj-methods html adjacencyMatrix html apoptosisGraph html attrData-class html attrDataItem-methods html attrDefaults-methods html aveNumEdges html biocRepos html boundary html calcProb html calcSumProb html clearNode html clusterGraph-class html clusteringCoefficient-methods html combineNodes html defunct html distGraph-class html duplicatedEdges html edgeData-methods html edgeDataDefaults-methods html edgeMatrix html edgeSets html edgeWeights html fromGXL-methods html graph-class html graph2SparseM html graphAM-class html graphBAM-class html graphExamples html graphNEL-class html inEdges html internal html isAdjacent-methods html isDirected-methods html leaves html listEdges html matrix2Graph html mostEdges html multigraph html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/graph.buildbin-libdir/00LOCK-graph/00new/graph/help/multiGraph-class.html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/graph.buildbin-libdir/00LOCK-graph/00new/graph/help/show+2CmultiGraph-method.html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/graph.buildbin-libdir/00LOCK-graph/00new/graph/help/isDirected+2CmultiGraph-method.html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/graph.buildbin-libdir/00LOCK-graph/00new/graph/help/nodes+2CmultiGraph-method.html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/graph.buildbin-libdir/00LOCK-graph/00new/graph/help/numNodes+2CmultiGraph-method.html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/graph.buildbin-libdir/00LOCK-graph/00new/graph/help/edges+2CmultiGraph-method.html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/graph.buildbin-libdir/00LOCK-graph/00new/graph/help/numEdges+2CmultiGraph-method.html nodeData-methods html nodeDataDefaults-methods html numNoEdges html pancrCaIni html randomEGraph html randomGraph html randomNodeGraph html removeEdge html removeNode html renderInfo-class html reverseEdgeDirections html settings html simpleEdge-class html standardLabeling html subGraph html toDotR-methods html toDotWithRI html ugraph html validGraph html write.tlp html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'graph' ... ** libs "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c graph.c -o graph.o C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o graph.dll tmp.def graph.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR mv graph.dll BioC_graph.dll installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/graph.buildbin-libdir/graph/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'graph' as graph_1.72.0.zip * DONE (graph) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'graph' successfully unpacked and MD5 sums checked