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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/genArise_1.70.0.tar.gz && rm -rf genArise.buildbin-libdir && mkdir genArise.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=genArise.buildbin-libdir genArise_1.70.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL genArise_1.70.0.zip && rm genArise_1.70.0.tar.gz genArise_1.70.0.zip
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install for i386
* installing *source* package 'genArise' ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
Note: possible error in 'pdf(paste(name, ".pdf", ': unused argument (horiz = FALSE)
Note: possible error in 'pdf(paste(name, ".pdf", ': unused argument (horiz = FALSE)
Note: possible error in 'pdf(paste(name, "OriginalCy3vsCy5.pdf", ': unused argument (horiz = F)
Note: possible error in 'pdf(paste(name, "OriginalRvsI.pdf", ': unused argument (horiz = F)
Note: possible error in 'pdf(paste(name, "OriginalMvsA.pdf", ': unused argument (horiz = F)
Note: possible error in 'pdf(paste(name, "CorrectedCy3vsCy5.pdf", ': unused argument (horiz = F)
Note: possible error in 'pdf(paste(name, "CorrectedRvsI.pdf", ': unused argument (horiz = F)
Note: possible error in 'pdf(paste(name, "CorrectedMvsA.pdf", ': unused argument (horiz = F)
Note: possible error in 'pdf(paste(name, "NormalCy3vsCy5.pdf", ': unused argument (horiz = F)
Note: possible error in 'pdf(paste(name, "NormalRvsI.pdf", ': unused argument (horiz = F)
Note: possible error in 'pdf(paste(name, "NormalMvsA.pdf", ': unused argument (horiz = F)
Note: possible error in 'pdf(paste(name, "FilterCy3vsCy5.pdf", ': unused argument (horiz = F)
Note: possible error in 'pdf(paste(name, "FilterRvsI.pdf", ': unused argument (horiz = F)
Note: possible error in 'pdf(paste(name, "FilterMvsA.pdf", ': unused argument (horiz = F)
Note: possible error in 'pdf(paste(name, "NoDuplicatesCy3vsCy5.pdf", ': unused argument (horiz = F)
Note: possible error in 'pdf(paste(name, "NoDuplicatesRvsI.pdf", ': unused argument (horiz = F)
Note: possible error in 'pdf(paste(name, "NoDuplicatesMvsA.pdf", ': unused argument (horiz = F)
Note: possible error in 'pdf(paste(name, "OriginalCy3vsCy5.pdf", ': unused argument (horiz = F)
Note: possible error in 'pdf(paste(name, "OriginalRvsI.pdf", ': unused argument (horiz = F)
Note: possible error in 'pdf(paste(name, "OriginalMvsA.pdf", ': unused argument (horiz = F)
Note: possible error in 'pdf(paste(name, "CorrectedCy3vsCy5.pdf", ': unused argument (horiz = F)
Note: possible error in 'pdf(paste(name, "CorrectedRvsI.pdf", ': unused argument (horiz = F)
Note: possible error in 'pdf(paste(name, "CorrectedMvsA.pdf", ': unused argument (horiz = F)
Note: possible error in 'pdf(paste(name, "NormalCy3vsCy5.pdf", ': unused argument (horiz = F)
Note: possible error in 'pdf(paste(name, "NormalRvsI.pdf", ': unused argument (horiz = F)
Note: possible error in 'pdf(paste(name, "NormalMvsA.pdf", ': unused argument (horiz = F)
Note: possible error in 'pdf(paste(name, "FilterCy3vsCy5.pdf", ': unused argument (horiz = F)
Note: possible error in 'pdf(paste(name, "FilterRvsI.pdf", ': unused argument (horiz = F)
Note: possible error in 'pdf(paste(name, "FilterMvsA.pdf", ': unused argument (horiz = F)
Note: possible error in 'pdf(paste(name, "NoDuplicatesCy3vsCy5.pdf", ': unused argument (horiz = F)
Note: possible error in 'pdf(paste(name, "NoDuplicatesRvsI.pdf", ': unused argument (horiz = F)
Note: possible error in 'pdf(paste(name, "NoDuplicatesMvsA.pdf", ': unused argument (horiz = F)
Note: possible error in 'pdf(name, horiz = F, ': unused argument (horiz = F)
Note: possible error in 'pdf(paste(name, ".pdf", ': unused argument (horiz = FALSE)
Note: possible error in 'pdf(paste(name, "R&G.pdf", ': unused argument (horiz = F)
Note: possible error in 'pdf(paste(name, "BgCy5.pdf", ': unused argument (horiz = F)
Note: possible error in 'pdf(paste(name, "BgCy3.pdf", ': unused argument (horiz = F)
Note: possible error in 'pdf(paste(name, "Swap.pdf", ': unused argument (horiz = F)
** help
*** installing help indices
converting help for package 'genArise'
finding HTML links ... done
DataSet-class html
Simon html
Spot-class html
WT.dataset html
Zscore html
Zscore.plot html
Zscore.points html
a.arise html
alter.unique html
analysis.window html
annotations html
back.gui html
bg.correct html
classes html
create.project html
cys.plot html
filter.spot html
genArise html
genArise.init html
genMerge html
get.Zscore html
get.values html
global.norm html
graphic.choose html
grid.norm html
help html
i.arise html
imageLimma html
m.arise html
ma.plot html
make.swap html
meanUnique html
note html
old.project html
post.analysis html
principal html
projects.select html
r.arise html
read.dataset html
read.spot html
reset.history html
ri.plot html
set.grid.properties html
set.history.project html
set.path.project html
set.project.properties html
single.norm html
spotUnique html
swap.select html
trim html
write.dataSet html
write.spot html
write.zscore html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'genArise' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'genArise' as genArise_1.70.0.zip
* DONE (genArise)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'genArise' successfully unpacked and MD5 sums checked
