############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/fmrs_1.4.0.tar.gz && rm -rf fmrs.buildbin-libdir && mkdir fmrs.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=fmrs.buildbin-libdir fmrs_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL fmrs_1.4.0.zip && rm fmrs_1.4.0.tar.gz fmrs_1.4.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 40897 100 40897 0 0 259k 0 --:--:-- --:--:-- --:--:-- 261k install for i386 * installing *source* package 'fmrs' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c fmrs.c -o fmrs.o fmrs.c: In function 'minimum': fmrs.c:138:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(i = 0; i < ncov1; i++) ^~~ fmrs.c:142:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' return(min1); ^~~~~~ fmrs.c: In function 'maximum': fmrs.c:152:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(i = 0; i < ncov1; i++) ^~~ fmrs.c:156:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' return(max1); ^~~~~~ fmrs.c: In function 'FMR_Norm_Surv_EM_MLE': fmrs.c:457:11: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(j = 0; j < (ONCOV[k1] + 1); j++) ^~~ fmrs.c:463:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' for (i = 0; i < (ONCOV[k1] + 1); i++) { ^~~ fmrs.c:285:12: warning: variable 'multX' set but not used [-Wunused-but-set-variable] double multX[nsize][NCOV][NCOMP]; ^~~~~ fmrs.c: In function 'FMR_Norm_Surv_EM_VarSel': fmrs.c:883:9: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(j = 0; j < NCOV; j++) ^~~ fmrs.c:887:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' for(i = 0; i < ONCOV[k1]; i++){ ^~~ fmrs.c:915:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(j = 0; j < (ONCOV[k1] + 1); j++) ^~~ fmrs.c:921:15: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' for (i = 0; i < (ONCOV[k1] + 1); i++) { ^~~ fmrs.c:687:12: warning: variable 'multX' set but not used [-Wunused-but-set-variable] double multX[nsize][NCOV][NCOMP]; ^~~~~ fmrs.c: In function 'FMR_Norm_Surv_CwTuneParSel': fmrs.c:1403:11: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(j = 0; j < (ONCOV[k1] + 1); j++) ^~~ fmrs.c:1409:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' for (i = 0; i < (ONCOV[k1] + 1); i++) { ^~~ fmrs.c:1218:12: warning: variable 'new_pi0' set but not used [-Wunused-but-set-variable] double new_pi0[NCOMP]; ^~~~~~~ fmrs.c:1211:12: warning: variable 'new_sigma0' set but not used [-Wunused-but-set-variable] double new_sigma0[NCOMP]; ^~~~~~~~~~ fmrs.c:1196:12: warning: variable 'multX' set but not used [-Wunused-but-set-variable] double multX[nsize][NCOV][NCOMP]; ^~~~~ fmrs.c: In function 'FMR_Weibl_Surv_EM_MLE': fmrs.c:1752:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(j = 0; j < (ONCOV[k1] + 1); j++) ^~~ fmrs.c:1758:15: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' for (i = 0; i < (ONCOV[k1] + 1); i++) { ^~~ fmrs.c:1547:12: warning: variable 'multX' set but not used [-Wunused-but-set-variable] double multX[nsize][NCOV][NCOMP]; ^~~~~ fmrs.c: In function 'FMR_Weibl_Surv_EM_VarSel': fmrs.c:2205:11: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(j = 0; j < (NCOV + 1); j++) ^~~ fmrs.c:2212:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' for(i = 0; i < (NCOV + 1); i++){ ^~~ fmrs.c:2251:15: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(j = 0; j < (NCOV + 2); j++) ^~~ fmrs.c:2257:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' for (i = 0; i < (NCOV + 2); i++) { ^~~ fmrs.c:2271:19: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(j = 0; j < (NCOV + 1); j++) ^~~ fmrs.c:2277:21: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' sumi5[k1] = 0.0; ^~~~~ fmrs.c: In function 'FMR_Weibl_Surv_CwTuneParSel': fmrs.c:2745:11: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(j = 0; j < NCOV; j++) ^~~ fmrs.c:2750:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' for(i = 0; i < ONCOV[k1]; i++){ ^~~ fmrs.c:2553:12: warning: variable 'multX' set but not used [-Wunused-but-set-variable] double multX[nsize][NCOV][k1]; ^~~~~ fmrs.c: In function 'FMR_Norm_Surv_EM_VarSel': fmrs.c:748:12: warning: 'sat_den' may be used uninitialized in this function [-Wmaybe-uninitialized] double sat_den; ^~~~~~~ fmrs.c: In function 'FMR_Weibl_Surv_EM_VarSel': fmrs.c:2072:12: warning: 'sat_den' may be used uninitialized in this function [-Wmaybe-uninitialized] double sat_den; ^~~~~~~ "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c fmrs_init.c -o fmrs_init.o C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o fmrs.dll tmp.def fmrs.o fmrs_init.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/fmrs.buildbin-libdir/00LOCK-fmrs/00new/fmrs/libs/i386 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'fmrs' finding HTML links ... done BIC-methods html coefficients-methods html dispersion-methods html fitted-methods html fmrs-package html fmrs.gendata-methods html fmrs.mle-methods html fmrs.tunsel-methods html fmrs.varsel-methods html fmrsfit-class html fmrstunpar-class html logLik-methods html mixProp-methods html ncomp-methods html ncov-methods html nobs-methods html residuals-methods html summary-methods html weights-methods html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'fmrs' ... ** libs "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c fmrs.c -o fmrs.o fmrs.c: In function 'minimum': fmrs.c:138:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(i = 0; i < ncov1; i++) ^~~ fmrs.c:142:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' return(min1); ^~~~~~ fmrs.c: In function 'maximum': fmrs.c:152:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(i = 0; i < ncov1; i++) ^~~ fmrs.c:156:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' return(max1); ^~~~~~ fmrs.c: In function 'FMR_Norm_Surv_EM_MLE': fmrs.c:457:11: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(j = 0; j < (ONCOV[k1] + 1); j++) ^~~ fmrs.c:463:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' for (i = 0; i < (ONCOV[k1] + 1); i++) { ^~~ fmrs.c:285:12: warning: variable 'multX' set but not used [-Wunused-but-set-variable] double multX[nsize][NCOV][NCOMP]; ^~~~~ fmrs.c: In function 'FMR_Norm_Surv_EM_VarSel': fmrs.c:883:9: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(j = 0; j < NCOV; j++) ^~~ fmrs.c:887:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' for(i = 0; i < ONCOV[k1]; i++){ ^~~ fmrs.c:915:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(j = 0; j < (ONCOV[k1] + 1); j++) ^~~ fmrs.c:921:15: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' for (i = 0; i < (ONCOV[k1] + 1); i++) { ^~~ fmrs.c:687:12: warning: variable 'multX' set but not used [-Wunused-but-set-variable] double multX[nsize][NCOV][NCOMP]; ^~~~~ fmrs.c: In function 'FMR_Norm_Surv_CwTuneParSel': fmrs.c:1403:11: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(j = 0; j < (ONCOV[k1] + 1); j++) ^~~ fmrs.c:1409:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' for (i = 0; i < (ONCOV[k1] + 1); i++) { ^~~ fmrs.c:1218:12: warning: variable 'new_pi0' set but not used [-Wunused-but-set-variable] double new_pi0[NCOMP]; ^~~~~~~ fmrs.c:1211:12: warning: variable 'new_sigma0' set but not used [-Wunused-but-set-variable] double new_sigma0[NCOMP]; ^~~~~~~~~~ fmrs.c:1196:12: warning: variable 'multX' set but not used [-Wunused-but-set-variable] double multX[nsize][NCOV][NCOMP]; ^~~~~ fmrs.c: In function 'FMR_Weibl_Surv_EM_MLE': fmrs.c:1752:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(j = 0; j < (ONCOV[k1] + 1); j++) ^~~ fmrs.c:1758:15: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' for (i = 0; i < (ONCOV[k1] + 1); i++) { ^~~ fmrs.c:1547:12: warning: variable 'multX' set but not used [-Wunused-but-set-variable] double multX[nsize][NCOV][NCOMP]; ^~~~~ fmrs.c: In function 'FMR_Weibl_Surv_EM_VarSel': fmrs.c:2205:11: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(j = 0; j < (NCOV + 1); j++) ^~~ fmrs.c:2212:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' for(i = 0; i < (NCOV + 1); i++){ ^~~ fmrs.c:2251:15: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(j = 0; j < (NCOV + 2); j++) ^~~ fmrs.c:2257:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' for (i = 0; i < (NCOV + 2); i++) { ^~~ fmrs.c:2271:19: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(j = 0; j < (NCOV + 1); j++) ^~~ fmrs.c:2277:21: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' sumi5[k1] = 0.0; ^~~~~ fmrs.c: In function 'FMR_Weibl_Surv_CwTuneParSel': fmrs.c:2745:11: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(j = 0; j < NCOV; j++) ^~~ fmrs.c:2750:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' for(i = 0; i < ONCOV[k1]; i++){ ^~~ fmrs.c:2553:12: warning: variable 'multX' set but not used [-Wunused-but-set-variable] double multX[nsize][NCOV][k1]; ^~~~~ fmrs.c: In function 'FMR_Norm_Surv_EM_VarSel': fmrs.c:748:12: warning: 'sat_den' may be used uninitialized in this function [-Wmaybe-uninitialized] double sat_den; ^~~~~~~ fmrs.c: In function 'FMR_Weibl_Surv_EM_VarSel': fmrs.c:2072:12: warning: 'sat_den' may be used uninitialized in this function [-Wmaybe-uninitialized] double sat_den; ^~~~~~~ "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c fmrs_init.c -o fmrs_init.o C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o fmrs.dll tmp.def fmrs.o fmrs_init.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/fmrs.buildbin-libdir/fmrs/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'fmrs' as fmrs_1.4.0.zip * DONE (fmrs) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'fmrs' successfully unpacked and MD5 sums checked