############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/ensembldb_2.18.4.tar.gz && rm -rf ensembldb.buildbin-libdir && mkdir ensembldb.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ensembldb.buildbin-libdir ensembldb_2.18.4.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL ensembldb_2.18.4.zip && rm ensembldb_2.18.4.tar.gz ensembldb_2.18.4.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 54 1219k 54 661k 0 0 1177k 0 0:00:01 --:--:-- 0:00:01 1177k 100 1219k 100 1219k 0 0 1420k 0 --:--:-- --:--:-- --:--:-- 1421k install for i386 * installing *source* package 'ensembldb' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'ensembldb' finding HTML links ... done Deprecated html EnsDb-AnnotationDbi html EnsDb-class html EnsDb-exonsBy html finding level-2 HTML links ... done EnsDb-lengths html EnsDb-seqlevels html EnsDb-sequences html EnsDb-utils html EnsDb html Filter-classes html ProteinFunctionality html cdsToTranscript html convertFilter html genomeToProtein html genomeToTranscript html global-filters html hasProteinData-EnsDb-method html listEnsDbs html makeEnsemblDbPackage html proteinToGenome html proteinToTranscript html runEnsDbApp html transcriptToCds html transcriptToGenome html transcriptToProtein html useMySQL-EnsDb-method html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'ensembldb' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'ensembldb' as ensembldb_2.18.4.zip * DONE (ensembldb) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'ensembldb' successfully unpacked and MD5 sums checked