############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/combi_1.6.0.tar.gz && rm -rf combi.buildbin-libdir && mkdir combi.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=combi.buildbin-libdir combi_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL combi_1.6.0.zip && rm combi_1.6.0.tar.gz combi_1.6.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 28 1097k 28 308k 0 0 909k 0 0:00:01 --:--:-- 0:00:01 909k 100 1097k 100 1097k 0 0 1395k 0 --:--:-- --:--:-- --:--:-- 1395k install for i386 * installing *source* package 'combi' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'combi' finding HTML links ... done addLink html arrayMult html buildCentMat html buildCompMat html buildConfMat html buildCovMat html buildEmptyJac html buildMarginalOffset html buildMu html buildMuMargins html buildOffsetModel html checkAlias html checkMeanVarTrend html checkMonotonicity html combi html convPlot html deriv2LagrangianFeatures html deriv2LagrangianLatentVars html deriv2LagrangianLatentVarsConstr html derivLagrangianFeatures html derivLagrangianLatentVars html derivLagrangianLatentVarsConstr html estFeatureParameters html estIndepModel html estLatentVars html estMeanVarTrend html estOff html extractCoords html extractData html extractMat html filterConfounders html getInflLatentVar html gramSchmidtOrth html indentPlot html inflPlot html influence.combi html jacConfounders html jacConfoundersComp html jacFeatures html jacLatentVars html jacLatentVarsConstr html plot.combi html polyHorner html predictSpline html prepareJacMat html prepareJacMatComp html prepareScoreMat html print.combi html quasiJacIndep html quasiScoreIndep html rowMultiply html scaleCoords html scoreConfounders html scoreConfoundersComp html scoreFeatureParams html scoreLatentVars html seqM html trimOnConfounders html zhangMetabo html zhangMetavars html zhangMicrobio html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'combi' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'combi' as combi_1.6.0.zip * DONE (combi) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'combi' successfully unpacked and MD5 sums checked