Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:06:16 -0400 (Wed, 13 Apr 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the brendaDb package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to [email protected]:packages/brendaDb.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 215/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
brendaDb 1.8.0 (landing page) Yi Zhou
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: brendaDb |
Version: 1.8.0 |
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/brendaDb_1.8.0.tar.gz && rm -rf brendaDb.buildbin-libdir && mkdir brendaDb.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=brendaDb.buildbin-libdir brendaDb_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL brendaDb_1.8.0.zip && rm brendaDb_1.8.0.tar.gz brendaDb_1.8.0.zip |
StartedAt: 2022-04-12 06:02:39 -0400 (Tue, 12 Apr 2022) |
EndedAt: 2022-04-12 06:04:50 -0400 (Tue, 12 Apr 2022) |
EllapsedTime: 130.9 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/brendaDb_1.8.0.tar.gz && rm -rf brendaDb.buildbin-libdir && mkdir brendaDb.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=brendaDb.buildbin-libdir brendaDb_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL brendaDb_1.8.0.zip && rm brendaDb_1.8.0.tar.gz brendaDb_1.8.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 26 363k 26 98361 0 0 315k 0 0:00:01 --:--:-- 0:00:01 314k 100 363k 100 363k 0 0 509k 0 --:--:-- --:--:-- --:--:-- 508k install for i386 * installing *source* package 'brendaDb' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c read_brenda.cpp -o read_brenda.o C:/rtools40/mingw32/bin/g++ -shared -s -static-libgcc -o brendaDb.dll tmp.def RcppExports.o read_brenda.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/brendaDb.buildbin-libdir/00LOCK-brendaDb/00new/brendaDb/libs/i386 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'brendaDb' finding HTML links ... done BiocycPathwayEnzymes html BiocycPathwayGenes html CleanECNumber html ConfigBPCores html DownloadBrenda html ExtractField html ID2Enzyme html InitBrendaDeprecatedEntry html InitBrendaEntry html ParseGeneric html ParseNoDescription html ParseProtein html ParseProteinNum html ParseReaction html ParseRecommendedName html ParseReference html ParseSystematicName html PrettyPrintBrendaEntry html PrintTreeHelper html QueryBrenda html QueryBrendaBase html ReadBrenda html ReadBrendaFile html SelectOrganism html SeparateEntries html SeparateSubentries html ShowFields html acronyms html brendaDb-package html print.brenda.entries html print.brenda.entry html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'brendaDb' ... ** libs "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c read_brenda.cpp -o read_brenda.o C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o brendaDb.dll tmp.def RcppExports.o read_brenda.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/brendaDb.buildbin-libdir/brendaDb/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'brendaDb' as brendaDb_1.8.0.zip * DONE (brendaDb) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'brendaDb' successfully unpacked and MD5 sums checked