############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/biscuiteer_1.8.0.tar.gz && rm -rf biscuiteer.buildbin-libdir && mkdir biscuiteer.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=biscuiteer.buildbin-libdir biscuiteer_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL biscuiteer_1.8.0.zip && rm biscuiteer_1.8.0.tar.gz biscuiteer_1.8.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 18 4610k 18 830k 0 0 1168k 0 0:00:03 --:--:-- 0:00:03 1167k 63 4610k 63 2929k 0 0 1715k 0 0:00:02 0:00:01 0:00:01 1714k 100 4610k 100 4610k 0 0 2000k 0 0:00:02 0:00:02 --:--:-- 2001k install for i386 * installing *source* package 'biscuiteer' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading Warning: replacing previous import 'BiocParallel::bpstart' by 'QDNAseq::bpstart' when loading 'biscuiteer' ** help *** installing help indices converting help for package 'biscuiteer' finding HTML links ... done CpGindex html ENSR_subset.hg19 html ENSR_subset.hg38 html GRCh37.chromArm html GRCh38.chromArm html H9state23unmeth.hg19 html H9state23unmeth.hg38 html HMM_CpG_islands.hg19 html HMM_CpG_islands.hg38 html RRBSeq html WGBSage html WGBSeq html atRegions html binCoverage html biscuitMetadata html biscuiteer-methods html biscuiteer-package html byChromArm html byExtremality html checkBiscuitBED html clocks html condenseSampleNames html extremality html fexpit html filterLoci html fixAge html fixNAs html flogit html getClock html getLogitFracMeth html grToSeg html hg19.chromArm html hg38.chromArm html makeBSseq html readBiscuit html segToGr html seqinfo.hg19 html seqinfo.hg38 html seqinfo.mm10 html simplifySampleNames html summarizeBsSeqOver html unionize html ** building package indices ** installing vignettes 'biscuiteer.Rmd' using 'UTF-8' ** testing if installed package can be loaded from temporary location Warning: replacing previous import 'BiocParallel::bpstart' by 'QDNAseq::bpstart' when loading 'biscuiteer' ** testing if installed package can be loaded from final location Warning: replacing previous import 'BiocParallel::bpstart' by 'QDNAseq::bpstart' when loading 'biscuiteer' ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'biscuiteer' ... ** testing if installed package can be loaded Warning: replacing previous import 'BiocParallel::bpstart' by 'QDNAseq::bpstart' when loading 'biscuiteer' * MD5 sums packaged installation of 'biscuiteer' as biscuiteer_1.8.0.zip * DONE (biscuiteer) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'biscuiteer' successfully unpacked and MD5 sums checked