Matteo Calgaro
| Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022) |
| git_url: https://git.bioconductor.org/packages/benchdamic |
| git_branch: RELEASE_3_14 |
| git_last_commit: 5175773 |
| git_last_commit_date: 2021-10-26 13:13:35 -0400 (Tue, 26 Oct 2021) |
| Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-04-13 12:06:13 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the benchdamic package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to [email protected]:packages/benchdamic.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 139/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| benchdamic 1.0.0 (landing page) Matteo Calgaro
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: benchdamic |
| Version: 1.0.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/benchdamic_1.0.0.tar.gz && rm -rf benchdamic.buildbin-libdir && mkdir benchdamic.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=benchdamic.buildbin-libdir benchdamic_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL benchdamic_1.0.0.zip && rm benchdamic_1.0.0.tar.gz benchdamic_1.0.0.zip |
| StartedAt: 2022-04-12 07:15:21 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 07:17:35 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 133.9 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/benchdamic_1.0.0.tar.gz && rm -rf benchdamic.buildbin-libdir && mkdir benchdamic.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=benchdamic.buildbin-libdir benchdamic_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL benchdamic_1.0.0.zip && rm benchdamic_1.0.0.tar.gz benchdamic_1.0.0.zip
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install for i386
* installing *source* package 'benchdamic' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
No methods found in package 'RSQLite' for request: 'dbListFields' when loading 'lumi'
** help
*** installing help indices
converting help for package 'benchdamic'
finding HTML links ... done
DA_ALDEx2 html
DA_DESeq2 html
DA_MAST html
DA_Seurat html
DA_corncob html
DA_edgeR html
DA_limma html
DA_metagenomeSeq html
RMSE html
addKnowledge html
areaCAT html
checkNormalization html
createColors html
createConcordance html
createEnrichment html
createMocks html
createPositives html
createSplits html
createTIEC html
enrichmentTest html
extractDA html
extractStatistics html
fitDM html
finding level-2 HTML links ... done
fitHURDLE html
fitModels html
fitNB html
fitZIG html
fitZINB html
getDA html
getPositives html
getStatistics html
iterative_ordering html
meanDifferences html
microbial_metabolism html
norm_CSS html
norm_DESeq2 html
norm_TSS html
norm_edgeR html
plotConcordance html
plotConcordanceDendrogram html
plotConcordanceHeatmap html
plotContingency html
plotEnrichment html
plotFPR html
plotKS html
plotMD html
plotMutualFindings html
plotPositives html
plotQQ html
plotRMSE html
prepareObserved html
ps_plaque_16S html
ps_stool_16S html
runDA html
runMocks html
runNormalizations html
runSplits html
setNormalizations html
set_ALDEx2 html
set_DESeq2 html
set_MAST html
set_Seurat html
set_corncob html
set_edgeR html
set_limma html
set_metagenomeSeq html
weights_ZINB html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
No methods found in package 'RSQLite' for request: 'dbListFields' when loading 'lumi'
** testing if installed package can be loaded from final location
No methods found in package 'RSQLite' for request: 'dbListFields' when loading 'lumi'
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'benchdamic' ...
** testing if installed package can be loaded
No methods found in package 'RSQLite' for request: 'dbListFields' when loading 'lumi'
* MD5 sums
packaged installation of 'benchdamic' as benchdamic_1.0.0.zip
* DONE (benchdamic)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'benchdamic' successfully unpacked and MD5 sums checked