Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:05:03 -0400 (Wed, 13 Apr 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the alsace package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to [email protected]:packages/alsace.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 47/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
Ron Wehrens
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | WARNINGS | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | |||||||||
Package: alsace |
Version: 1.30.0 |
Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:alsace.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings alsace_1.30.0.tar.gz |
StartedAt: 2022-04-12 06:21:05 -0400 (Tue, 12 Apr 2022) |
EndedAt: 2022-04-12 06:21:54 -0400 (Tue, 12 Apr 2022) |
EllapsedTime: 49.3 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: alsace.Rcheck |
Warnings: 1 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:alsace.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings alsace_1.30.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.14-bioc/meat/alsace.Rcheck’ * using R version 4.1.3 (2022-03-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘alsace/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘alsace’ version ‘1.30.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘alsace’ can be installed ... WARNING Found the following significant warnings: Warning: Package 'alsace' is deprecated and will be removed from Bioconductor See ‘/home/biocbuild/bbs-3.14-bioc/meat/alsace.Rcheck/00install.out’ for details. * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE 'library' or 'require' call to ‘lattice’ in package code. Please use :: or requireNamespace() instead. See section 'Suggested packages' in the 'Writing R Extensions' manual. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE getPeakTable : clusterPeaks: no visible global function definition for ‘stripplot’ getPeakTable : clusterPeaks : <anonymous>: no visible global function definition for ‘panel.stripplot’ getPeakTable : clusterPeaks : <anonymous>: no visible global function definition for ‘panel.abline’ Undefined global functions or variables: panel.abline panel.stripplot stripplot * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed components 8.59 0.024 8.615 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 WARNING, 2 NOTEs See ‘/home/biocbuild/bbs-3.14-bioc/meat/alsace.Rcheck/00check.log’ for details.
alsace.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD INSTALL alsace ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.14-bioc/R/library’ * installing *source* package ‘alsace’ ... ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning: Package 'alsace' is deprecated and will be removed from Bioconductor version 3.15 ** testing if installed package can be loaded from final location Warning: Package 'alsace' is deprecated and will be removed from Bioconductor version 3.15 ** testing if installed package keeps a record of temporary installation path * DONE (alsace)
alsace.Rcheck/alsace-Ex.timings
name | user | system | elapsed | |
components | 8.590 | 0.024 | 8.615 | |
correctPeaks | 3.173 | 0.000 | 3.174 | |
correctRT | 1.606 | 0.000 | 1.607 | |
doALS | 3.580 | 0.012 | 3.593 | |
filterPeaks | 0.034 | 0.000 | 0.034 | |
fitpeaks | 3.441 | 0.004 | 3.446 | |
getAllPeaks | 0.027 | 0.000 | 0.027 | |
getPeakTable | 1.634 | 0.000 | 1.634 | |
opa | 0.939 | 0.000 | 0.939 | |
preprocess | 0.095 | 0.000 | 0.094 | |
showALSresult | 0.083 | 0.000 | 0.084 | |
tea | 0.096 | 0.000 | 0.096 | |
teaMerged | 4.574 | 0.140 | 4.715 | |
windows | 0.095 | 0.008 | 0.102 | |