Peter Dimitrov
| Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022) |
| git_url: https://git.bioconductor.org/packages/aCGH |
| git_branch: RELEASE_3_14 |
| git_last_commit: b5d4022 |
| git_last_commit_date: 2021-10-26 11:47:03 -0400 (Tue, 26 Oct 2021) |
| Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-04-13 12:06:08 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the aCGH package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to [email protected]:packages/aCGH.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 13/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| aCGH 1.72.0 (landing page) Peter Dimitrov
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: aCGH |
| Version: 1.72.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/aCGH_1.72.0.tar.gz && rm -rf aCGH.buildbin-libdir && mkdir aCGH.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=aCGH.buildbin-libdir aCGH_1.72.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL aCGH_1.72.0.zip && rm aCGH_1.72.0.tar.gz aCGH_1.72.0.zip |
| StartedAt: 2022-04-12 04:31:04 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 04:33:33 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 148.6 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/aCGH_1.72.0.tar.gz && rm -rf aCGH.buildbin-libdir && mkdir aCGH.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=aCGH.buildbin-libdir aCGH_1.72.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL aCGH_1.72.0.zip && rm aCGH_1.72.0.tar.gz aCGH_1.72.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
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0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
35 1527k 35 537k 0 0 963k 0 0:00:01 --:--:-- 0:00:01 963k
100 1527k 100 1527k 0 0 1330k 0 0:00:01 0:00:01 --:--:-- 1330k
install for i386
* installing *source* package 'aCGH' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -DUSEDOUBLE -g3 -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c hmm.cpp -o hmm.o
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o aCGH.dll tmp.def hmm.o -lm -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/aCGH.buildbin-libdir/00LOCK-aCGH/00new/aCGH/libs/i386
** R
** data
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'aCGH'
finding HTML links ... done
aCGH html
aCGH.process html
aCGH.read.Sprocs html
aCGH.test html
clusterGenome html
colorectal html
computeSD.func html
fga.func html
find.genomic.events html
find.hmm.states html
findAber.func html
findAmplif.func html
findOutliers.func html
findTrans.func html
gainLoss html
heatmap html
human.chrom.info.Jul03 html
human.chrom.info.May04 html
impute.HMM html
impute.lowess html
mergeFunc html
mergeLevels html
plotFreqStat html
plotGenome html
plotHmmStates html
plotSummaryProfile html
states.hmm.func html
summarize.clones html
threshold.func html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'aCGH' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -DUSEDOUBLE -g3 -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c hmm.cpp -o hmm.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o aCGH.dll tmp.def hmm.o -lm -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/aCGH.buildbin-libdir/aCGH/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'aCGH' as aCGH_1.72.0.zip
* DONE (aCGH)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'aCGH' successfully unpacked and MD5 sums checked