############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/aCGH_1.72.0.tar.gz && rm -rf aCGH.buildbin-libdir && mkdir aCGH.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=aCGH.buildbin-libdir aCGH_1.72.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL aCGH_1.72.0.zip && rm aCGH_1.72.0.tar.gz aCGH_1.72.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 35 1527k 35 537k 0 0 963k 0 0:00:01 --:--:-- 0:00:01 963k 100 1527k 100 1527k 0 0 1330k 0 0:00:01 0:00:01 --:--:-- 1330k install for i386 * installing *source* package 'aCGH' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -DUSEDOUBLE -g3 -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c hmm.cpp -o hmm.o C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o aCGH.dll tmp.def hmm.o -lm -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/aCGH.buildbin-libdir/00LOCK-aCGH/00new/aCGH/libs/i386 ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'aCGH' finding HTML links ... done aCGH html aCGH.process html aCGH.read.Sprocs html aCGH.test html clusterGenome html colorectal html computeSD.func html fga.func html find.genomic.events html find.hmm.states html findAber.func html findAmplif.func html findOutliers.func html findTrans.func html gainLoss html heatmap html human.chrom.info.Jul03 html human.chrom.info.May04 html impute.HMM html impute.lowess html mergeFunc html mergeLevels html plotFreqStat html plotGenome html plotHmmStates html plotSummaryProfile html states.hmm.func html summarize.clones html threshold.func html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'aCGH' ... ** libs "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -DUSEDOUBLE -g3 -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c hmm.cpp -o hmm.o C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o aCGH.dll tmp.def hmm.o -lm -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/aCGH.buildbin-libdir/aCGH/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'aCGH' as aCGH_1.72.0.zip * DONE (aCGH) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'aCGH' successfully unpacked and MD5 sums checked