############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/SPLINTER_1.20.0.tar.gz && rm -rf SPLINTER.buildbin-libdir && mkdir SPLINTER.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SPLINTER.buildbin-libdir SPLINTER_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL SPLINTER_1.20.0.zip && rm SPLINTER_1.20.0.tar.gz SPLINTER_1.20.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 803k 100 803k 0 0 1287k 0 --:--:-- --:--:-- --:--:-- 1289k install for i386 * installing *source* package 'SPLINTER' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for 'toJSON' from package 'jsonlite' in package 'googleVis' Warning: replacing previous import 'IRanges::windows' by 'grDevices::windows' when loading 'SPLINTER' ** help *** installing help indices converting help for package 'SPLINTER' finding HTML links ... done acceptor.m html addEnsemblAnnotation html annotateEvents html callPrimer3 html checkPrimer html compatible_cds html compatible_tx html donor.m html eventOutcomeCompare html eventOutcomeTranslate html eventPlot html extendROI html extractSpliceEvents html extractSpliceSites html findCompatibleEvents html findCompatibleExon html findExactOverlaps html findTX html findTermination html getPCRsizes html getRegionDNA html insertRegion html makeROI html makeUniqueIDs html matchExons html metaremove html pcr_result1 html plot_seqlogo html primers html psiPlot html region_minus_exon html removeRegion html remvalue html roi html shapiroAcceptor html shapiroDensity html shapiroDonor html splice_data html splice_fasta html splitPCRhit html thecds html theexons html valid_cds html valid_tx html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Creating a generic function for 'toJSON' from package 'jsonlite' in package 'googleVis' Warning: replacing previous import 'IRanges::windows' by 'grDevices::windows' when loading 'SPLINTER' ** testing if installed package can be loaded from final location Creating a generic function for 'toJSON' from package 'jsonlite' in package 'googleVis' Warning: replacing previous import 'IRanges::windows' by 'grDevices::windows' when loading 'SPLINTER' ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'SPLINTER' ... ** testing if installed package can be loaded Creating a generic function for 'toJSON' from package 'jsonlite' in package 'googleVis' Warning: replacing previous import 'IRanges::windows' by 'grDevices::windows' when loading 'SPLINTER' * MD5 sums packaged installation of 'SPLINTER' as SPLINTER_1.20.0.zip * DONE (SPLINTER) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'SPLINTER' successfully unpacked and MD5 sums checked