############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/S4Vectors_0.32.4.tar.gz && rm -rf S4Vectors.buildbin-libdir && mkdir S4Vectors.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=S4Vectors.buildbin-libdir S4Vectors_0.32.4.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL S4Vectors_0.32.4.zip && rm S4Vectors_0.32.4.tar.gz S4Vectors_0.32.4.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 263k 100 263k 0 0 986k 0 --:--:-- --:--:-- --:--:-- 990k install for i386 * installing *source* package 'S4Vectors' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c AEbufs.c -o AEbufs.o AEbufs.c: In function '_increase_buflength': AEbufs.c:16:23: warning: conversion from 'long long unsigned int' to 'size_t' {aka 'unsigned int'} changes value from '4294967296' to '0' [-Woverflow] #define MAX_BUFLENGTH (128ULL * MAX_BUFLENGTH_INC) // 2^32 ^ AEbufs.c:31:9: note: in expansion of macro 'MAX_BUFLENGTH' return MAX_BUFLENGTH; ^~~~~~~~~~~~~ AEbufs.c: In function '_IntAEAE_toEnvir': AEbufs.c:626:36: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'size_t' {aka 'unsigned int'} [-Wformat=] snprintf(key, sizeof(key), "%010lu", i + keyshift); ~~~~~^ ~~~~~~~~~~~~ %010u "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c DataFrame_class.c -o DataFrame_class.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c Hits_class.c -o Hits_class.o In file included from C:/Users/BIOCBU~1/BBS-3~1.14-/R/include/Rdefines.h:42, from ../inst/include/S4Vectors_defines.h:18, from S4Vectors.h:1, from Hits_class.c:4: Hits_class.c: In function 'Hits_new': C:/Users/BIOCBU~1/BBS-3~1.14-/R/include/Rinternals.h:1549:20: warning: 'revmap' may be used uninitialized in this function [-Wmaybe-uninitialized] #define defineVar Rf_defineVar ^~~~~~~~~~~~ Hits_class.c:216:12: note: 'revmap' was declared here SEXP ans, revmap, symbol; ^~~~~~ "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c LLint_class.c -o LLint_class.o LLint_class.c: In function 'from_llints_to_STRSXP': LLint_class.c:358:27: warning: unknown conversion type character 'l' in format [-Wformat=] if (sprintf(val_buf, "%lld", from_elt) < 0) ^ LLint_class.c:358:24: warning: too many arguments for format [-Wformat-extra-args] if (sprintf(val_buf, "%lld", from_elt) < 0) ^~~~~~ LLint_class.c:358:27: warning: unknown conversion type character 'l' in format [-Wformat=] if (sprintf(val_buf, "%lld", from_elt) < 0) ^ LLint_class.c:358:24: warning: too many arguments for format [-Wformat-extra-args] if (sprintf(val_buf, "%lld", from_elt) < 0) ^~~~~~ LLint_class.c: In function 'llints_summary': LLint_class.c:775:35: warning: 'res' may be used uninitialized in this function [-Wmaybe-uninitialized] if (res == NA_LLINT || in_elt > res) ~~~~~~~^~~~~ "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c List_class.c -o List_class.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c R_init_S4Vectors.c -o R_init_S4Vectors.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c Rle_class.c -o Rle_class.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c Rle_utils.c -o Rle_utils.o Rle_utils.c: In function 'Rle_real_runq': Rle_utils.c:701:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (count_na != 0) ^~ Rle_utils.c:703:6: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' q_index = roundingScale(window_len_na, ^~~~~~~ "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c SEXP_utils.c -o SEXP_utils.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c SimpleList_class.c -o SimpleList_class.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c anyMissing.c -o anyMissing.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c character_utils.c -o character_utils.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c eval_utils.c -o eval_utils.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c hash_utils.c -o hash_utils.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c integer_utils.c -o integer_utils.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c logical_utils.c -o logical_utils.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c map_ranges_to_runs.c -o map_ranges_to_runs.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c raw_utils.c -o raw_utils.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c safe_arithm.c -o safe_arithm.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c sort_utils.c -o sort_utils.o sort_utils.c:263:13: warning: 'sort_uchar_array' defined but not used [-Wunused-function] static void sort_uchar_array(unsigned char *x, int nelt, int desc) ^~~~~~~~~~~~~~~~ "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c subsetting_utils.c -o subsetting_utils.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c vector_utils.c -o vector_utils.o C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o S4Vectors.dll tmp.def AEbufs.o DataFrame_class.o Hits_class.o LLint_class.o List_class.o R_init_S4Vectors.o Rle_class.o Rle_utils.o SEXP_utils.o SimpleList_class.o anyMissing.o character_utils.o eval_utils.o hash_utils.o integer_utils.o logical_utils.o map_ranges_to_runs.o raw_utils.o safe_arithm.o sort_utils.o subsetting_utils.o vector_utils.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/S4Vectors.buildbin-libdir/00LOCK-S4Vectors/00new/S4Vectors/libs/i386 ** R ** inst ** byte-compile and prepare package for lazy loading in method for 'normalizeSingleBracketReplacementValue' with signature '"List"': no definition for class "List" Creating a new generic function for 'unname' in package 'S4Vectors' Creating a new generic function for 'expand.grid' in package 'S4Vectors' Creating a new generic function for 'findMatches' in package 'S4Vectors' Creating a generic function for 'setequal' from package 'base' in package 'S4Vectors' in method for 'coerce' with signature '"Hits","DFrame"': no definition for class "DFrame" Creating a generic function for 'as.factor' from package 'base' in package 'S4Vectors' Creating a generic function for 'tabulate' from package 'base' in package 'S4Vectors' Creating a generic function for 'cov' from package 'stats' in package 'S4Vectors' Creating a generic function for 'cor' from package 'stats' in package 'S4Vectors' Creating a generic function for 'smoothEnds' from package 'stats' in package 'S4Vectors' Creating a generic function for 'runmed' from package 'stats' in package 'S4Vectors' Creating a generic function for 'nchar' from package 'base' in package 'S4Vectors' Creating a generic function for 'substr' from package 'base' in package 'S4Vectors' Creating a generic function for 'substring' from package 'base' in package 'S4Vectors' Creating a generic function for 'chartr' from package 'base' in package 'S4Vectors' Creating a generic function for 'tolower' from package 'base' in package 'S4Vectors' Creating a generic function for 'toupper' from package 'base' in package 'S4Vectors' Creating a generic function for 'sub' from package 'base' in package 'S4Vectors' Creating a generic function for 'gsub' from package 'base' in package 'S4Vectors' Creating a generic function for 'nlevels' from package 'base' in package 'S4Vectors' in method for 'coerce' with signature '"data.table","DFrame"': no definition for class "data.table" Creating a generic function for 'complete.cases' from package 'stats' in package 'S4Vectors' ** help *** installing help indices converting help for package 'S4Vectors' finding HTML links ... done Annotated-class html DataFrame-class html DataFrame-combine html DataFrame-comparison html DataFrame-utils html Factor-class html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/S4Vectors.buildbin-libdir/00LOCK-S4Vectors/00new/S4Vectors/help/unfactor+2CFactor-method.html FilterMatrix-class html FilterRules-class html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/S4Vectors.buildbin-libdir/00LOCK-S4Vectors/00new/S4Vectors/help/FilterRules.html Hits-class html Hits-comparison html Hits-setops html HitsList-class html LLint-class html List-class html List-utils html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/S4Vectors.buildbin-libdir/00LOCK-S4Vectors/00new/S4Vectors/help/revElements+2CList-method.html Pairs-class html RectangularData-class html Rle-class html Rle-runstat html Rle-utils html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/S4Vectors.buildbin-libdir/00LOCK-S4Vectors/00new/S4Vectors/help/summary+2CRle-method.html S4Vectors-internals html SimpleList-class html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/S4Vectors.buildbin-libdir/00LOCK-S4Vectors/00new/S4Vectors/help/coerce+2Clist+2CList-method.html TransposedDataFrame-class html Vector-class html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/S4Vectors.buildbin-libdir/00LOCK-S4Vectors/00new/S4Vectors/help/rename+2CVector-method.html Vector-comparison html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/S4Vectors.buildbin-libdir/00LOCK-S4Vectors/00new/S4Vectors/help/selfmatch+2Cfactor-method.html Vector-merge html Vector-setops html aggregate-methods html bindROWS html character-utils html expand-methods html integer-utils html isSorted html shiftApply-methods html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/S4Vectors.buildbin-libdir/00LOCK-S4Vectors/00new/S4Vectors/help/shiftApply+2Cvector+2Cvector-method.html show-utils html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/S4Vectors.buildbin-libdir/00LOCK-S4Vectors/00new/S4Vectors/help/showAsCell+2Clist-method.html splitAsList html stack-methods html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/S4Vectors.buildbin-libdir/00LOCK-S4Vectors/00new/S4Vectors/help/mstack+2Cvector-method.html subsetting-utils html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/S4Vectors.buildbin-libdir/00LOCK-S4Vectors/00new/S4Vectors/help/getListElement+2Clist-method.html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/S4Vectors.buildbin-libdir/00LOCK-S4Vectors/00new/S4Vectors/help/setListElement+2Clist-method.html zip-methods html ** building package indices ** installing vignettes 'RleTricks.Rnw' using 'UTF-8' 'S4QuickOverview.Rnw' using 'UTF-8' 'S4VectorsOverview.Rnw' using 'UTF-8' ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'S4Vectors' ... ** libs "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c AEbufs.c -o AEbufs.o AEbufs.c: In function '_IntAEAE_toEnvir': AEbufs.c:626:36: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'size_t' {aka 'long long unsigned int'} [-Wformat=] snprintf(key, sizeof(key), "%010lu", i + keyshift); ~~~~~^ ~~~~~~~~~~~~ %010I64u "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c DataFrame_class.c -o DataFrame_class.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c Hits_class.c -o Hits_class.o In file included from C:/Users/BIOCBU~1/BBS-3~1.14-/R/include/Rdefines.h:42, from ../inst/include/S4Vectors_defines.h:18, from S4Vectors.h:1, from Hits_class.c:4: Hits_class.c: In function 'Hits_new': C:/Users/BIOCBU~1/BBS-3~1.14-/R/include/Rinternals.h:1549:20: warning: 'revmap' may be used uninitialized in this function [-Wmaybe-uninitialized] #define defineVar Rf_defineVar ^~~~~~~~~~~~ Hits_class.c:216:12: note: 'revmap' was declared here SEXP ans, revmap, symbol; ^~~~~~ "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c LLint_class.c -o LLint_class.o LLint_class.c: In function 'from_llints_to_STRSXP': LLint_class.c:358:27: warning: unknown conversion type character 'l' in format [-Wformat=] if (sprintf(val_buf, "%lld", from_elt) < 0) ^ LLint_class.c:358:24: warning: too many arguments for format [-Wformat-extra-args] if (sprintf(val_buf, "%lld", from_elt) < 0) ^~~~~~ LLint_class.c:358:27: warning: unknown conversion type character 'l' in format [-Wformat=] if (sprintf(val_buf, "%lld", from_elt) < 0) ^ LLint_class.c:358:24: warning: too many arguments for format [-Wformat-extra-args] if (sprintf(val_buf, "%lld", from_elt) < 0) ^~~~~~ LLint_class.c: In function 'llints_summary': LLint_class.c:775:35: warning: 'res' may be used uninitialized in this function [-Wmaybe-uninitialized] if (res == NA_LLINT || in_elt > res) ~~~~~~~^~~~~ "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c List_class.c -o List_class.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c R_init_S4Vectors.c -o R_init_S4Vectors.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c Rle_class.c -o Rle_class.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c Rle_utils.c -o Rle_utils.o Rle_utils.c: In function 'Rle_real_runq': Rle_utils.c:701:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (count_na != 0) ^~ Rle_utils.c:703:6: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' q_index = roundingScale(window_len_na, ^~~~~~~ "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c SEXP_utils.c -o SEXP_utils.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c SimpleList_class.c -o SimpleList_class.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c anyMissing.c -o anyMissing.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c character_utils.c -o character_utils.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c eval_utils.c -o eval_utils.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c hash_utils.c -o hash_utils.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c integer_utils.c -o integer_utils.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c logical_utils.c -o logical_utils.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c map_ranges_to_runs.c -o map_ranges_to_runs.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c raw_utils.c -o raw_utils.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c safe_arithm.c -o safe_arithm.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c sort_utils.c -o sort_utils.o sort_utils.c:263:13: warning: 'sort_uchar_array' defined but not used [-Wunused-function] static void sort_uchar_array(unsigned char *x, int nelt, int desc) ^~~~~~~~~~~~~~~~ "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c subsetting_utils.c -o subsetting_utils.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c vector_utils.c -o vector_utils.o C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o S4Vectors.dll tmp.def AEbufs.o DataFrame_class.o Hits_class.o LLint_class.o List_class.o R_init_S4Vectors.o Rle_class.o Rle_utils.o SEXP_utils.o SimpleList_class.o anyMissing.o character_utils.o eval_utils.o hash_utils.o integer_utils.o logical_utils.o map_ranges_to_runs.o raw_utils.o safe_arithm.o sort_utils.o subsetting_utils.o vector_utils.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/S4Vectors.buildbin-libdir/S4Vectors/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'S4Vectors' as S4Vectors_0.32.4.zip * DONE (S4Vectors) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'S4Vectors' successfully unpacked and MD5 sums checked