Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:07:13 -0400 (Wed, 13 Apr 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the RImmPort package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to [email protected]:packages/RImmPort.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1610/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
RImmPort 1.22.0 (landing page) Zicheng Hu
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: RImmPort |
Version: 1.22.0 |
Command: C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:RImmPort.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings RImmPort_1.22.0.tar.gz |
StartedAt: 2022-04-13 01:43:56 -0400 (Wed, 13 Apr 2022) |
EndedAt: 2022-04-13 01:45:20 -0400 (Wed, 13 Apr 2022) |
EllapsedTime: 83.6 seconds |
RetCode: 0 |
Status: OK |
CheckDir: RImmPort.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:RImmPort.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings RImmPort_1.22.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/RImmPort.Rcheck' * using R version 4.1.3 (2022-03-10) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'RImmPort/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'RImmPort' version '1.22.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'RImmPort' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE buildNewSqliteDb: no visible global function definition for 'dbListTables' Undefined global functions or variables: dbListTables * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See 'C:/Users/biocbuild/bbs-3.14-bioc/meat/RImmPort.Rcheck/00check.log' for details.
RImmPort.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/RImmPort_1.22.0.tar.gz && rm -rf RImmPort.buildbin-libdir && mkdir RImmPort.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RImmPort.buildbin-libdir RImmPort_1.22.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL RImmPort_1.22.0.zip && rm RImmPort_1.22.0.tar.gz RImmPort_1.22.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 19 1912k 19 371k 0 0 551k 0 0:00:03 --:--:-- 0:00:03 551k 89 1912k 89 1714k 0 0 1012k 0 0:00:01 0:00:01 --:--:-- 1011k 100 1912k 100 1912k 0 0 1059k 0 0:00:01 0:00:01 --:--:-- 1059k install for i386 * installing *source* package 'RImmPort' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'RImmPort' finding HTML links ... done AE html APMH html Adverse-Events-Domain html Associated-Persons-Medical-History-Domain html CM html Cellular-Quantification-Domain html Concomitant-Medications-Domain html DM html DV html Demographics-Domain html EX html Events-class html Exposure-Domain html FA html Findings-About-Domain html Findings-class html Genetics-Findings-Domain html Interventions-class html LB html Laboratory-Test-Results-Domain html MH html Medical-History-Domain html Nucleic-Acid-Quantification-Domain html PE html PF html Physical-Examination-Domain html Protein-Quantification-Domain html Protocol-Deviations-Domain html QS html Questionnaires-Domain html RImmPort html SR html SU html SUPP html SUPPDV html SUPPFA html SUPPLB html SUPPMH html SUPPPE html SUPPPF html SUPPVS html SUPPZA html SUPPZB html SUPPZC html SUPPZD html SV html Skin-Response-Domain html SpecialPurpose-class html Study-class html Subject-Visits-Domain html Substance-Use-Domain html TA html TI html TS html TV html Titer-Assay-Results-Domain html Trial-Arms-Domain html Trial-Inclusion-Exclusion-Criteria-Domain html Trial-Summary-Domain html Trial-Visits-Domain html TrialDesign-class html VS html Vital-Signs-Domain html ZA html ZB html ZC html ZD html buildNewSqliteDb html getAssayDataOfStudies html getDomainCode html getDomainDataOfStudies html getListOfAssayTypes html getListOfDomains html getListOfStudies html getStudiesWithSpecificAssayData html getStudiesWithSpecificDomainData html getStudy html loadSerializedStudyData html mergeDomainAndSupplemental html serialzeStudyData html setImmPortDataSource html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'RImmPort' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'RImmPort' as RImmPort_1.22.0.zip * DONE (RImmPort) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'RImmPort' successfully unpacked and MD5 sums checked
RImmPort.Rcheck/examples_i386/RImmPort-Ex.timings
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RImmPort.Rcheck/examples_x64/RImmPort-Ex.timings
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