############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:QUBIC.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings QUBIC_1.22.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 鈥�/home/biocbuild/bbs-3.14-bioc/meat/QUBIC.Rcheck鈥� * using R version 4.1.3 (2022-03-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option 鈥�--no-vignettes鈥� * checking for file 鈥楺UBIC/DESCRIPTION鈥� ... OK * checking extension type ... Package * this is package 鈥楺UBIC鈥� version 鈥�1.22.0鈥� * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package 鈥楺UBIC鈥� can be installed ... OK * checking installed package size ... NOTE installed size is 6.0Mb sub-directories of 1Mb or more: libs 5.9Mb * checking package directory ... OK * checking 鈥榖uild鈥� directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking compiled code ... NOTE Note: information on .o files is not available File 鈥�/home/biocbuild/bbs-3.14-bioc/R/library/QUBIC/libs/QUBIC.so鈥�: Found 鈥榮tderr鈥�, possibly from 鈥榮tderr鈥� (C) Found 鈥榮tdout鈥�, possibly from 鈥榮tdout鈥� (C) Compiled code should not call entry points which might terminate R nor write to stdout/stderr instead of to the console, nor use Fortran I/O nor system RNGs. The detected symbols are linked into the code but might come from libraries and not actually be called. See 鈥榃riting portable packages鈥� in the 鈥榃riting R Extensions鈥� manual. * checking files in 鈥榲ignettes鈥� ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 鈥榠nst/doc鈥� ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See 鈥�/home/biocbuild/bbs-3.14-bioc/meat/QUBIC.Rcheck/00check.log鈥� for details.