############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/Pi_2.6.0.tar.gz && rm -rf Pi.buildbin-libdir && mkdir Pi.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Pi.buildbin-libdir Pi_2.6.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL Pi_2.6.0.zip && rm Pi_2.6.0.tar.gz Pi_2.6.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 50 1207k 50 611k 0 0 712k 0 0:00:01 --:--:-- 0:00:01 711k 100 1207k 100 1207k 0 0 927k 0 0:00:01 0:00:01 --:--:-- 927k install for i386 * installing *source* package 'Pi' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading Warning: replacing previous import 'ROCR::plot' by 'graphics::plot' when loading 'Pi' ** help *** installing help indices converting help for package 'Pi' finding HTML links ... done EG html GS html aOnto html cTarget html dTarget html eGSEA html eTarget html eTerm html iSubg html ls_eTerm html pNode html pPerf html sGS html sTarget html xAggregate html xCheckParallel html xCircos html xColormap html xCombineNet html xContour html xConverter html xCorrelation html xDAGanno html xDefineEQTL html xDefineHIC html xDefineNet html xDefineOntology html xEnrichForest html xEnrichViewer html xEnricher html xEnricherGenes html xGGnetwork html xGR html xGR2nGenes html xGR2xGeneScores html xGR2xGenes html xGRscores html xGRsort html xGSEAbarplot html xGSEAconciser html xGSEAdotplot html xGSsimulator html xGeneID2Symbol html xHeatmap html xLayout html xLiftOver html xMEabf html xMLcaret html xMLcompare html xMLdensity html xMLdotplot html xMLfeatureplot html xMLglmnet html xMLparameters html xMLrandomforest html xMLrename html xMLzoom html xPieplot html xPier html xPierABF html xPierABFheatmap html xPierAnno html xPierCor html xPierCross html xPierEvidence html xPierGRs html xPierGSEA html xPierGenes html xPierMRS html xPierManhattan html xPierMatrix html xPierPathways html xPierROCR html xPierSNPs html xPierSNPsAdv html xPierSNPsAdvABF html xPierSubnet html xPierTrack html xPierTrackAdv html xPredictCompare html xPredictROCR html xRDataLoader html xRWR html xSM2DF html xSNP2cGenes html xSNP2eGenes html xSNP2nGenes html xSNPlocations html xSNPscores html xSparseMatrix html xSubneterGenes html xSymbol2GeneID html xVisEvidence html xVisEvidenceAdv html xVisKernels html xVisNet html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning: replacing previous import 'ROCR::plot' by 'graphics::plot' when loading 'Pi' ** testing if installed package can be loaded from final location Warning: replacing previous import 'ROCR::plot' by 'graphics::plot' when loading 'Pi' ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'Pi' ... ** testing if installed package can be loaded Warning: replacing previous import 'ROCR::plot' by 'graphics::plot' when loading 'Pi' * MD5 sums packaged installation of 'Pi' as Pi_2.6.0.zip * DONE (Pi) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'Pi' successfully unpacked and MD5 sums checked