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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/PhosR_1.4.0.tar.gz && rm -rf PhosR.buildbin-libdir && mkdir PhosR.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PhosR.buildbin-libdir PhosR_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL PhosR_1.4.0.zip && rm PhosR_1.4.0.tar.gz PhosR_1.4.0.zip
###
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100 6099k  100 6099k    0     0  2457k      0  0:00:02  0:00:02 --:--:-- 2458k

install for i386

* installing *source* package 'PhosR' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'PhosR'
    finding HTML links ... done
    KinaseFamily                            html  
    PhosphoExperiment-methods               html  
    PhosphoExperiment-operate               html  
    finding level-2 HTML links ... done

    PhosphoExperiment                       html  
    PhosphoSite.human                       html  
    PhosphoSite.mouse                       html  
    PhosphoSite.rat                         html  
    RUVphospho                              html  
    SPSs                                    html  
    Signalomes                              html  
    createFrequencyMat                      html  
    frequencyScoring                        html  
    getSPS                                  html  
    hSEGs                                   html  
    kinaseSubstrateHeatmap                  html  
    kinaseSubstratePred                     html  
    kinaseSubstrateProfile                  html  
    kinaseSubstrateScore                    html  
    mIntersect                              html  
    mSEGs                                   html  
    matANOVA                                html  
    meanAbundance                           html  
    medianScaling                           html  
    minmax                                  html  
    motif.human.list                        html  
    motif.mouse.list                        html  
    motif.rat.list                          html  
    pathwayOverrepresent                    html  
    pathwayRankBasedEnrichment              html  
    phosCollapse                            html  
    phospho.L6.ratio                        html  
    phospho.L6.ratio.pe                     html  
    phospho.cells.Ins                       html  
    phospho.liver.Ins.TC.ratio.RUV          html  
    phospho.liver.Ins.TC.ratio.RUV.pe       html  
    plotKinaseNetwork                       html  
    plotQC                                  html  
    plotSignalomeMap                        html  
    ptImpute                                html  
    scImpute                                html  
    selectGrps                              html  
    selectLocalisedSites                    html  
    selectOverallPercent                    html  
    selectTimes                             html  
    siteAnnotate                            html  
    standardise                             html  
    tImpute                                 html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'PhosR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'PhosR' as PhosR_1.4.0.zip
* DONE (PhosR)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'PhosR' successfully unpacked and MD5 sums checked