############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:NoRCE.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings NoRCE_1.6.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 鈥�/Users/biocbuild/bbs-3.14-bioc/meat/NoRCE.Rcheck鈥� * using R version 4.1.3 (2022-03-10) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option 鈥�--no-vignettes鈥� * checking for file 鈥楴oRCE/DESCRIPTION鈥� ... OK * checking extension type ... Package * this is package 鈥楴oRCE鈥� version 鈥�1.6.0鈥� * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package 鈥楴oRCE鈥� can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 鈥榖uild鈥� directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 鈥榙ata鈥� directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 鈥榲ignettes鈥� ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed genePathwayEnricher 29.361 0.098 32.022 KeggEnrichment 28.286 0.875 50.720 assembly 22.704 0.618 40.978 calculateCorr 12.449 0.301 12.759 mirnaGOEnricher 9.278 0.247 9.586 geneGOEnricher 8.787 0.314 9.111 writeEnrichment 8.124 0.231 8.370 mirnaRegionGOEnricher 6.131 0.192 6.333 getReactomeDiagram 6.113 0.155 6.277 getKeggDiagram 5.499 0.069 5.819 geneRegionGOEnricher 5.233 0.180 5.426 mirnaPathwayEnricher 5.147 0.075 5.472 * checking for unstated dependencies in 鈥榯ests鈥� ... OK * checking tests ... Running 鈥榯estthat.R鈥� OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 鈥榠nst/doc鈥� ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK