Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-04-13 12:06:57 -0400 (Wed, 13 Apr 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the MultiDataSet package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to [email protected]:packages/MultiDataSet.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1242/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
MultiDataSet 1.22.0 (landing page) Xavier EscribĂ Montagut
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | WARNINGS | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | |||||||||
Package: MultiDataSet |
Version: 1.22.0 |
Command: C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:MultiDataSet.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings MultiDataSet_1.22.0.tar.gz |
StartedAt: 2022-04-12 23:26:25 -0400 (Tue, 12 Apr 2022) |
EndedAt: 2022-04-12 23:30:20 -0400 (Tue, 12 Apr 2022) |
EllapsedTime: 235.7 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: MultiDataSet.Rcheck |
Warnings: 1 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:MultiDataSet.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings MultiDataSet_1.22.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/MultiDataSet.Rcheck' * using R version 4.1.3 (2022-03-10) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'MultiDataSet/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'MultiDataSet' version '1.22.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'MultiDataSet' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Unexported objects imported by ':::' calls: 'Biobase:::assayDataEnvLock' 'Biobase:::assayDataStorageMode' See the note in ?`:::` about the use of this operator. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE downloadGEO : <anonymous>: no visible global function definition for 'methylationSet' lambdaClayton: no visible global function definition for 'qnorm' lambdaClayton: no visible global function definition for 'qchisq' qq_plot: no visible global function definition for 'qbeta' Undefined global functions or variables: methylationSet qbeta qchisq qnorm Consider adding importFrom("stats", "qbeta", "qchisq", "qnorm") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... WARNING Codoc mismatches from documentation object 'ResultSet': \S4method{getAssociation}{ResultSet} Code: function(object, rid = 1, coef = 2, contrast = NULL, fNames = NULL, robust = FALSE, ...) Docs: function(object, rid = 1, coef = 2, contrast = NULL, fNames = NULL, ...) Argument names in code not in docs: robust Mismatches in argument names: Position: 6 Code: robust Docs: ... * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed add_methy 14.37 2.39 27.12 ** running examples for arch 'x64' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed add_methy 15.8 0.81 16.64 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 WARNING, 2 NOTEs See 'C:/Users/biocbuild/bbs-3.14-bioc/meat/MultiDataSet.Rcheck/00check.log' for details.
MultiDataSet.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/MultiDataSet_1.22.0.tar.gz && rm -rf MultiDataSet.buildbin-libdir && mkdir MultiDataSet.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MultiDataSet.buildbin-libdir MultiDataSet_1.22.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL MultiDataSet_1.22.0.zip && rm MultiDataSet_1.22.0.tar.gz MultiDataSet_1.22.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 65355 100 65355 0 0 147k 0 --:--:-- --:--:-- --:--:-- 147k install for i386 * installing *source* package 'MultiDataSet' ... ** using staged installation Warning in .write_description(db, file.path(outDir, "DESCRIPTION")) : Unknown encoding with non-ASCII data: converting to ASCII ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading in method for 'add_methy' with signature '"MultiDataSet","GenomicRatioSet"': no definition for class "GenomicRatioSet" ** help *** installing help indices converting help for package 'MultiDataSet' finding HTML links ... done MultiDataSet-class html MultiDataSet html ResultSet-class html add_eset html add_genexp html add_methy html add_rnaseq-methods html add_rse html add_se html add_snps html add_table html chrNumToChar html commonIds html commonSamples html getAssociation-methods html lambdaClayton html mae2mds html mds2mae html opt-methods html qq_plot html rowRangesElements html rset html volcano_plot html w_iclusterplus html w_mcia html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'MultiDataSet' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'MultiDataSet' as MultiDataSet_1.22.0.zip * DONE (MultiDataSet) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'MultiDataSet' successfully unpacked and MD5 sums checked
MultiDataSet.Rcheck/examples_i386/MultiDataSet-Ex.timings
|
MultiDataSet.Rcheck/examples_x64/MultiDataSet-Ex.timings
|